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Ronin (Thap11) Deficiency Results in a Disease Impacting both Vitamin B <sub>12</sub> Metabolism and Ribosome Biogenesis

2019· article· en· W3176478639 on OpenAlexaff
Annita Achilleos, Xuefei Tong, Tiffany Chern, Matthew C. Hill, Min Zhang, Arindam Chaudhury, Joel R. Neilson, Jenny J. Sun, Russell Ray, David Watkins, David S. Rosenblatt, James F. Martin, Ross A. Poché

Bibliographic record

VenueThe FASEB Journal · 2019
Typearticle
Languageen
FieldMedicine
TopicFolate and B Vitamins Research
Canadian institutionsMcGill University
Fundersnot available
KeywordsMicrocephalyGeneticsBiologyMethylmalonic acidemiaBioinformaticsEndocrinology

Abstract

fetched live from OpenAlex

Combined methylmalonic acidemia and homocystinuria ( cblC type), a form of inherited intracellular vitamin B 12 deficiency, is a rare metabolic and multi‐systemic disorder caused by mutations in MMACHC . Patients with cblC can have severe neurodevelopmental defects including microcephaly, hydrocephaly and seizures as well as renal, cardiac and hematological defects. Mutations in MMACHC have been the sole known causes of cblC , until recently when an X‐linked variant of the disease was described, termed cblX . This variant was found to be due to mutations in the X‐linked gene coding for the transcription cofactor HCFC1 , which is known to be an obligatory partner for the transcription factor RONIN (THAP11). Intriguingly, a single patient exhibiting cblX‐like findings has been found to carry a mutation in RONIN . Patients, with both HCFC1 and RONIN mutations, were shown to have a dramatic reduction in MMACHC transcription. We have previously shown that the Hcfc1/Ronin transcriptional complex directly regulates mouse Mmachc expression. These findings suggest that cblX and the new Ronin (THAP11) disorder comprise a novel family of rare and severe cblC ‐like disorders that are transcriptional in nature. As a result, we have generated a mouse model that carries the human mutation in Ronin ( Ronin F80L ), in an effort to better understand the cellular mechanisms underlying the pathophysiology of these devastating neurodevelopmental diseases. Here we report the generation of the first mouse model, Ronin F80L along with its phenotypic and molecular characterization. Ronin F80L homozygous mice die soon after birth and exhibit severe brain developmental defects that recapitulate those observed in the human cblX and Ronin‐deficient patients. Moreover, consistent with a vitamin B 12 deficiency, cells from Ronin F80L homozygous embryos exhibit defects in cobalamin metabolism. Surprisingly however, RNA‐seq and ChIP‐seq analyses also revealed a role for ribosome biogenesis in the pathophysiology of the disease. Furthermore, we were able to show that there is also a functional deficit in ribosome biogenesis and hence protein translation. This identifies for the first time, a role for Ronin in ribosome biogenesis. Together the phenotypic and molecular data confirm that the Ronin F80L mouse model will serve as a powerful tool to further uncover the pathophysiology of this complex family of diseases. Support or Funding Information Baylor College of Medicine, Department of Molecular Physiology and Biophysics (Seed) This abstract is from the Experimental Biology 2019 Meeting. There is no full text article associated with this abstract published in The FASEB Journal .

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.003
Threshold uncertainty score0.009

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.000
Science and technology studies0.0000.001
Scholarly communication0.0000.000
Open science0.0000.001
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0030.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.019
GPT teacher head0.273
Teacher spread0.254 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2019
Admission routes1
Has abstractyes

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