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Formate metabolism in the folate‐deficient rat

2012· article· en· W3177063588 on OpenAlexafffundabout
Gregory P. Morrow, Simon G. Lamarre, Margaret E. Brosnan, James T. Brosnan

Bibliographic record

VenueThe FASEB Journal · 2012
Typearticle
Languageen
FieldMedicine
TopicFolate and B Vitamins Research
Canadian institutionsMemorial University of Newfoundland
FundersMemorial University of Newfoundland
KeywordsFormateChemistryCatabolismMetabolismFormic acidGlycineBiochemistryAmino acidInternal medicineEndocrinologyBiologyMedicine

Abstract

fetched live from OpenAlex

Formate may arise from amino acid metabolism (serine, glycine, histidine, tryptophan, and methionine), from demethylation reactions, and methanol catabolism. Plasma [formate] is approximately 50 μM in rats. We have shown that plasma and urinary formate are increased up to 6‐fold in either folate‐deficient or Vitamin B12‐deficient rats, and may be a useful marker for remethylation defects. We therefore determined formate production rates in folate‐deficient and control rats. Rats were fed a folate‐deficient diet for 18 days; controls received a folate‐replete diet. Formate appearance was determined by means of a constant infusion of NaH13CO2. Plateau isotopic enrichment in formate was determined via GC‐MS. The rate of formate production in folate‐deficient rats was 43±4 umol/hr/100g compared to 76±16 umol/hr/100g for control rats (P<0.001). This decreased rate of formate production in the face of elevated [formate] implies an appreciable impairment in formate removal. In control rats, formate production amounted to 40% of the total potential one‐carbon groups generated from the diet. We conclude that formate production is a major, though unrecognized, motif in amino acid catabolism. Grant Funding Source : Canadian Institutes for Health Research and Memorial University of Newfoundland

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.005
Threshold uncertainty score0.011

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0010.000
Science and technology studies0.0000.001
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0020.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.038
GPT teacher head0.316
Teacher spread0.278 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations2
Published2012
Admission routes3
Has abstractyes

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