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Record W3177118857 · doi:10.1096/fasebj.20.4.a310-d

Polymorphisms in 5′UTR of ENaC α, β and γgenes in Dahl and Wistar rats

2006· article· en· W3177118857 on OpenAlexaff
Marlene Shehata, Frans H. H. Leenen, Frédérique Tesson

Bibliographic record

VenueThe FASEB Journal · 2006
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicIon Transport and Channel Regulation
Canadian institutionsUniversity of Ottawa
Fundersnot available
KeywordsEpithelial sodium channelSingle-nucleotide polymorphismUntranslated regionGeneThree prime untranslated regionBiologyGeneticsPromoterMolecular biologyInternal medicineEndocrinologyGene expressionMessenger RNAMedicineGenotypeSodiumChemistry

Abstract

fetched live from OpenAlex

The activity of the epithelial sodium channel (ENaC) in the kidney is elevated in salt sensitive (SS) versus salt resistant (SR) Dahl rats. Blockade of ENaC in the brain by benzamil prevents the increase in BP in SS Dahl rats on high salt diet. Previously, we did a comprehensive screening of the complete coding regions of ENaC α, β and γ genes and no differences were identified in SS versus SR Dahl rats. In the presentstudy, we assessed whether the promotor regions of ENaC genes might harbor genetic variation(s) that enhance ENaC expression and contribute to salt sensitivity in Dahl SS, but not SR rats. Methods Screening 5′UTR of ENaC genes in Dahl SS, SR and control Wistar rats by Denaturing High Performance Liquid Chromatography (DHPLC) and automatic sequencing. Results Screening 2.2, 1.5, and 2.2 kb of 5′UTR of ENaCα, β and γ respectively showed no differences between Dahl SS and SR rats. A total of 18 SNPs; 4 SNPs in ENaCα 5′UTR, 2 in ENaCβ5′UTR, and 12 in ENaCγ 5′UTR were identified in Dahl SS and SR rats. 4 of these 18 SNPs were previously identified in the genome database of Brown Norway rats. The remaining 14 SNPs are novel polymorphisms. Of these 14 SNPs, 13 were also identified in Wistar rats. None of the identified SNPs in the 5′UTR of ENaC genes were located within the previously reported regulatory element DNA consensus sequences. Conclusions The first comprehensive screening of ENaC genes 5′UTR did not reveal any differences between SS and SR. Therefore, we could not link differences in activity of ENaC in SS versus SR to differences in ENaC 5′UTR sequences. The identified variations in ENaC genes 5′UTR on their own can not explain salt‐sensitive hypertension in Dahl SS rats.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.218
Threshold uncertainty score0.145

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.005
GPT teacher head0.199
Teacher spread0.193 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations0
Published2006
Admission routes1
Has abstractyes

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