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Record W3178789045 · doi:10.1093/cid/ciab607

Long-Term Persistence of Spike Protein Antibody and Predictive Modeling of Antibody Dynamics After Infection With Severe Acute Respiratory Syndrome Coronavirus 2

2021· article· en· W3178789045 on OpenAlexaff
Louis Grandjean, Anja Saso, Arturo Torres Ortiz, Tanya Lam, James Hatcher, Rosie Thistlethwayte, Mark Harris, Timothy Best, Marina Johnson, Helen R. Wagstaffe, Elizabeth Ralph, Annabelle Mai, Caroline Colijn, Judith Breuer, Matthew Buckland, Kimberly Gilmour, David Goldblatt, Dorcas Mirambe-Korsah, Fernanda Fenn Torrente, Jakub Wyszynski, Victoria Gander, Amy Leonard, Louise Myers, Aimee Vallot, Camille Paillas, Rose Fitzgerald, Adam Twigg, Rabia Manaf, Lois Gibbons, Hollie Powell, Richard Nar-Dorh, A. H. Gray, Elías Carrocera Fernández, Aline Minja, Emily Beech, Waffa Girshab, Pei Shi Chia, Kate Webb, Malti Nakrani, Kim Gardiner, Valerija Karaluka, Karen Ryan, Dorothy Lee Katie Groves, Hamad Khan, Shamime Nsubuga, Olivia Rosie-Wilkinson, Julia Spires, Nuria Sanchez-Clemente, Sapriya Kaur, Natasha Carroll, Jemma Efford, Gabriel Bredin, Celma Marisa Dos Santos Domingues, Sophie Foxall, Helen Ashton, Abbey Afzal, Sally Mainland, Kate Crumpler, Lucinda Dawson, Claire M. Smith, Maria Tabbu, Laura Chiverton, Jade Sugars, Jordan Mooney, Dorothy Chikusu, Fariba Tahami, Baratth Samy, Shomona Begum, Dhimple Patel, Philippa Wiltshire, Annie Susay, Anna Ryan, Luke Lancaster, Kavita Thind, Kate Speller, Rachel Sterling, Connor Tugulu, Sandhya Ghurburrun, Steffi Gray, Joy Mugas, Moe Kishma, Kathleen Akpokomua, Sophie White, Eleana Pieri, Sabina Shamsad, Demi Alexandrou, Odera Aguele, Katherine Miles, Anamika Jain, Subishma Gautam, Oliver Simms, Rachel Goff, Zarif Shams, Tinya Chirinda, Aaliya Nur, Tarekur Rahman

Bibliographic record

VenueClinical Infectious Diseases · 2021
Typearticle
Languageen
FieldMedicine
TopicSARS-CoV-2 and COVID-19 Research
Canadian institutionsSimon Fraser University
FundersNational Institute of Allergy and Infectious DiseasesNational Institutes of HealthNational Institute for Health and Care ResearchWellcome Trust
KeywordsAntibodyMedicineImmunologySerologyConfidence intervalAntibody titerPersistence (discontinuity)Respiratory systemImmunoglobulin GVirologyTiterInternal medicine

Abstract

fetched live from OpenAlex

BACKGROUND: Antibodies to severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) have been shown to neutralize the virus in vitro and prevent disease in animal challenge models on reexposure. However, the current understanding of SARS-CoV-2 humoral dynamics and longevity is conflicting. METHODS: The COVID-19 Staff Testing of Antibody Responses Study (Co-Stars) prospectively enrolled 3679 healthcare workers to comprehensively characterize the kinetics of SARS-CoV-2 spike protein (S), receptor-binding domain, and nucleoprotein (N) antibodies in parallel. Participants screening seropositive had serial monthly serological testing for a maximum of 7 months with the Meso Scale Discovery Assay. Survival analysis determined the proportion of seroreversion, while 2 hierarchical gamma models predicted the upper and lower bounds of long-term antibody trajectory. RESULTS: A total of 1163 monthly samples were provided from 349 seropositive participants. At 200 days after symptoms, >95% of participants had detectable S antibodies, compared with 75% with detectable N antibodies. S antibody was predicted to remain detectable in 95% of participants until 465 days (95% confidence interval, 370-575 days) using a "continuous-decay" model and indefinitely using a "decay-to-plateau" model to account for antibody secretion by long-lived plasma cells. S-antibody titers were correlated strongly with surrogate neutralization in vitro (R2 = 0.72). N antibodies, however, decayed rapidly with a half-life of 60 days (95% confidence interval, 52-68 days). CONCLUSIONS: The Co-Stars data presented here provide evidence for long-term persistence of neutralizing S antibodies. This has important implications for the duration of functional immunity after SARS-CoV-2 infection. In contrast, the rapid decay of N antibodies must be considered in future seroprevalence studies and public health decision-making. This is the first study to establish a mathematical framework capable of predicting long-term humoral dynamics after SARS-CoV-2 infection. CLINICAL TRIALS REGISTRATION: NCT04380896.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.002
metaresearch head score (Gemma)0.003
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.016
Threshold uncertainty score0.032

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0020.003
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0000.001
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0010.000
Open science0.0010.001
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.051
GPT teacher head0.397
Teacher spread0.346 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations58
Published2021
Admission routes1
Has abstractyes

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