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Record W3184082157 · doi:10.1007/s00122-021-03912-0

Genetic diversity, distribution and domestication history of the neglected GGAtAt genepool of wheat

2021· article· en· W3184082157 on OpenAlexfundno aff
Е. Д. Бадаева, Fedor A. Konovalov, H. Knüpffer, Agostino Fricano, Alevtina Ruban, Zakaria Kehel, Svyatoslav A. Zoshchuk, С. А. Суржиков, Kerstin Neumann, Andreas Graner, Karl Hammer, A. A. Filatenko, Amy Bogaard, Glynis Jones, Hakan Özkan, Benjamin Kilian

Bibliographic record

VenueTheoretical and Applied Genetics · 2021
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicWheat and Barley Genetics and Pathology
Canadian institutionsnot available
FundersFP7 Food, Agriculture and Fisheries, BiotechnologyRussian Academy of SciencesAgriculture and Agri-Food CanadaAgricultural Research ServiceSiberian Branch, Russian Academy of SciencesU.S. Department of AgricultureRussian Foundation for Basic ResearchInternational Center for Agricultural Research in the Dry AreasDeutsche Forschungsgemeinschaft
KeywordsBiologyDomesticationContext (archaeology)Genetic diversityPopulationEvolutionary biologyIntraspecific competitionGeneticsEcology

Abstract

fetched live from OpenAlex

Abstract Key message We present a comprehensive survey of cytogenetic and genomic diversity of the GGA t A t genepool of wheat, thereby unlocking these plant genetic resources for wheat improvement. Abstract Wheat yields are stagnating around the world and new sources of genes for resistance or tolerances to abiotic traits are required. In this context, the tetraploid wheat wild relatives are among the key candidates for wheat improvement. Despite its potential huge value for wheat breeding, the tetraploid GGA t A t genepool is largely neglected. Understanding the population structure, native distribution range, intraspecific variation of the entire tetraploid GGA t A t genepool and its domestication history would further its use for wheat improvement. The paper provides the first comprehensive survey of genomic and cytogenetic diversity sampling the full breadth and depth of the tetraploid GGA t A t genepool. According to the results obtained, the extant GGA t A t genepool consists of three distinct lineages. We provide detailed insights into the cytogenetic composition of GGA t A t wheats, revealed group- and population-specific markers and show that chromosomal rearrangements play an important role in intraspecific diversity of T. araraticum . The origin and domestication history of the GGA t A t lineages is discussed in the context of state-of-the-art archaeobotanical finds. We shed new light on the complex evolutionary history of the GGA t A t wheat genepool and provide the basis for an increased use of the GGA t A t wheat genepool for wheat improvement. The findings have implications for our understanding of the origins of agriculture in southwest Asia.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.741
Threshold uncertainty score0.266

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.001
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.009
GPT teacher head0.181
Teacher spread0.172 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations38
Published2021
Admission routes1
Has abstractyes

Explore more

Same venueTheoretical and Applied GeneticsSame topicWheat and Barley Genetics and PathologyFrench-language works237,207