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Record W3186162585 · doi:10.3390/jpm11080733

Identification of ROBO2 as a Potential Locus Associated with Inhaled Corticosteroid Response in Childhood Asthma

2021· article· en· W3186162585 on OpenAlexaff
Natalia Hernandez‐Pacheco, Mario Gorenjak, Jiang Li, Katja Repnik, Susanne J. H. Vijverberg, Vojko Berce, Andrea Jorgensen, Leila Karimi, Maximilian Schieck, Lesly‐Anne Samedy, Roger Tavendale, Jesús Villar, Somnath Mukhopadhyay, Munir Pirmohamed, Katia Verhamme, Michael Kabesch, Daniel B. Hawcutt, Steve Turner, Kelan G. Tantisira, Esteban G. Burchard, Anke H. Maitland‐van der Zee, Carlos Flores, Uroš Potočnik, Maria Pino‐Yanes

Bibliographic record

VenueJournal of Personalized Medicine · 2021
Typearticle
Languageen
FieldMedicine
TopicAsthma and respiratory diseases
Canadian institutionsSt. Michael's Hospital
FundersNational Institute of Environmental Health SciencesNational Heart, Lung, and Blood InstituteAgencia Estatal de InvestigaciónNational Institutes of HealthInstituto de Salud Carlos IIIRobert Wood Johnson FoundationZonMwEuropean Regional Development FundEuropean CommissionNational Institute of General Medical SciencesNational Institute for Health and Care ResearchJavna Agencija za Raziskovalno Dejavnost RSMinisterio de Ciencia, Innovación y UniversidadesAmerican Asthma FoundationWellcome TrustGlaxoSmithKlineEuropean Social FundMinistrstvo za Izobraževanje, Znanost in ŠportUtrechts Instituut voor Farmaceutische Wetenschappen, Departement Farmaceutische Wetenschappen, Universiteit Utrecht
KeywordsAsthmaGenome-wide association studyInhaled corticosteroidsMedicineSNPLocus (genetics)AlleleGenetic associationImmunologySingle-nucleotide polymorphismGeneBiologyGeneticsGenotype

Abstract

fetched live from OpenAlex

Inhaled corticosteroids (ICS) are the most common asthma controller medication. An important contribution of genetic factors in ICS response has been evidenced. Here, we aimed to identify novel genetic markers involved in ICS response in asthma. A genome-wide association study (GWAS) of the change in lung function after 6 weeks of ICS treatment was performed in 166 asthma patients from the SLOVENIA study. Patients with an improvement in lung function ≥8% were considered as ICS responders. Suggestively associated variants (p-value ≤ 5 × 10−6) were evaluated in an independent study (n = 175). Validation of the association with asthma exacerbations despite ICS use was attempted in European (n = 2681) and admixed (n = 1347) populations. Variants previously associated with ICS response were also assessed for replication. As a result, the SNP rs1166980 from the ROBO2 gene was suggestively associated with the change in lung function (OR for G allele: 7.01, 95% CI: 3.29–14.93, p = 4.61 × 10−7), although this was not validated in CAMP. ROBO2 showed gene-level evidence of replication with asthma exacerbations despite ICS use in Europeans (minimum p-value = 1.44 × 10−5), but not in admixed individuals. The association of PDE10A-T with ICS response described by a previous study was validated. This study suggests that ROBO2 could be a potential novel locus for ICS response in Europeans.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.003
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.885
Threshold uncertainty score0.572

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.003
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0000.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.009
GPT teacher head0.274
Teacher spread0.265 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations10
Published2021
Admission routes1
Has abstractyes

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