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Record W3192489061 · doi:10.1002/em.22457

Assessment of cellular and molecular metrics for dose selection in an <i>in vivo</i> comet assay: A case study with MDI

2021· article· en· W3192489061 on OpenAlexfundno aff
Zhiying Ji, Matthew W. Koehler, Andrew B. Scott, Matthew J. LeBaron

Bibliographic record

VenueEnvironmental and Molecular Mutagenesis · 2021
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicCarcinogens and Genotoxicity Assessment
Canadian institutionsnot available
FundersInstitute of Infection and Immunity
KeywordsComet assayGenotoxicityCytotoxicityIn vivoDNA damageChemistryToxicityBronchoalveolar lavageMolecular biologyToxicologyPathologyBiologyBiochemistryIn vitroLungMedicineDNAInternal medicineGenetics

Abstract

fetched live from OpenAlex

Abstract The in vivo comet assay can evaluate the genotoxic potential of a chemical in theoretically any tissue that can be processed to a single cell suspension. This flexibility enables evaluation of point‐of‐contact tissues using a relevant route of test material administration; however, assessing cytotoxicity is essential for the interpretation of comet results. Histopathological evaluation is routinely utilized to assess cytotoxicity, but temporal‐ and cell‐specific considerations may compromise applicability to the comet assay. In the present study, 1,1′‐methylenebis(4‐isocyanatobenzene) (4,4'‐MDI) was administered to rats for 6 h by nose‐only inhalation, and the comet assay was conducted to evaluate genotoxicity in the site‐of‐contact tissue (bronchoalveolar lavage cells) and distal tissues (liver and glandular stomach). Given the reactive nature of MDI, cellular and molecular metrics at the site‐of‐contact‐ including inflammation, macrophage activation, apoptosis/necrosis, and oxidative stress‐ were used to set appropriate exposure concentrations, in addition to the standard systemic measures of toxicity. In the range‐finding study, a concentration of 4 mg/m 3 was considered the maximum noninflammatory concentration; hence target concentrations of 2, 5, and 11 mg/m 3 were selected for the comet study. In the lung lavage, MDI exposure substantially increased total protein and β‐glucuronidase, along with cellular apoptosis. Although MDI did not increase the comet assay response (% tail DNA) in any of the tissues examined, the positive control (ethyl methanesulfonate, EMS) significantly increased % tail DNA in all tissues. In total, these data indicate that appropriate cellular and molecular measurements may facilitate dose selection to discern cellular status in the comet assay.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.069
Threshold uncertainty score0.902

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.007
GPT teacher head0.250
Teacher spread0.242 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations1
Published2021
Admission routes1
Has abstractyes

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