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Record W3193567675 · doi:10.1038/s41467-021-25167-5

Two doses of SARS-CoV-2 vaccination induce robust immune responses to emerging SARS-CoV-2 variants of concern

2021· article· en· W3193567675 on OpenAlexfundno aff
Donal Skelly, Adam Harding, Javier Gilbert‐Jaramillo, Michael L. Knight, Stéphanie Longet, Anthony Brown, Sandra Adele, Emily Adland, Helen Brown, Senthil Chinnakannan, Timothy Donnison, Mohammad Ali, Patpong Rongkard, Matthew Pace, Peny Zacharopoulou, Nicola Robinson, Anna Csala, Cathy De Lara, Claire Hutchings, Hema Mehta, Lian Ni Lee, Matthew Edmans, Carl-Philipp Hackstein, Prabhjeet Phalora, Wenqin Li, Eloise Phillips, Tom Malone, Ane Ogbe, Cecilia Jay, Timothy Tipoe, Tom Tipton, Lizzie Stafford, Alexander J. Mentzer, Síle A. Johnson, Ali Amini, Thomas Marjot, Stavros Dimitriadis, Beatrice Simmons, Alexandra Deeks, Sven Kerneis, Hibatullah Abuelgasim, Robert Wilson, Sarah Thomas, Adam Watson, Ahmed Alhussni, Joseph Cutteridge, Esme Weeks, Lucy Denly, Katy Lillie, Jennifer Holmes, Philippa C. Matthews, Denise O’Donnell, Tiong Kit Tan, Lisa Schimanski, Kuan-Ying A. Huang, Pramila Rijal, Lance Turtle, Thushan I. de Silva, Alex Richter, C.J. Duncan, Rebecca Payne, Shona C. Moore, Julian C. Knight, Mark Philip Cassar, Betty Raman, Stefan Neubauer, Anastasia Fries, Nick P. Talbot, Nayia Petousi, Ling‐Pei Ho, Yanchun Peng, Tao Dong, Susana Camara, Spyridoula Marinou, Aline Linder, Syed Adlou, Mwila Kasanyinga, Alice Bridges-Webb, Jennifer Hill, Laura Silva-Reyes, Luke Blackwell, John Frater, Philip Goulder, Christopher P. Conlon, Katie Jeffery, Christina Dold, Andrew J. Pollard, Alex Sigal, Túlio de Oliveira, Alain Townsend, Paul Klenerman, Susanna Dunachie, Eleanor Barnes, Miles W. Carroll, William James

Bibliographic record

VenueNature Communications · 2021
Typearticle
Languageen
FieldMedicine
TopicSARS-CoV-2 and COVID-19 Research
Canadian institutionsnot available
FundersMedical Research CouncilNational Institutes of HealthHamilton Health Sciences FoundationUniversity of OxfordPublic Health EnglandDepartment of Health and Social CareNational Institute for Health and Care ResearchNational Institute for Health Research Health Protection Research UnitUniversity of New South WalesBritish Heart FoundationNIHR Oxford Biomedical Research CentreWellcome TrustBiotechnology and Biological Sciences Research CouncilHuo Family FoundationUK Research and InnovationUK Coronavirus Immunology ConsortiumMeso Scale Diagnostics
KeywordsSevere acute respiratory syndrome coronavirus 2 (SARS-CoV-2)Coronavirus disease 2019 (COVID-19)2019-20 coronavirus outbreakSars virusVaccinationVirologyImmune systemBetacoronavirusMedicineCoronavirus InfectionsPandemicImmunologyOutbreakInfectious disease (medical specialty)Disease

Abstract

fetched live from OpenAlex

The extent to which immune responses to natural infection with severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) and immunization with vaccines protect against variants of concern (VOC) is of increasing importance. Accordingly, here we analyse antibodies and T cells of a recently vaccinated, UK cohort, alongside those recovering from natural infection in early 2020. We show that neutralization of the VOC compared to a reference isolate of the original circulating lineage, B, is reduced: more profoundly against B.1.351 than for B.1.1.7, and in responses to infection or a single dose of vaccine than to a second dose of vaccine. Importantly, high magnitude T cell responses are generated after two vaccine doses, with the majority of the T cell response directed against epitopes that are conserved between the prototype isolate B and the VOC. Vaccination is required to generate high potency immune responses to protect against these and other emergent variants.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.004
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.055
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.004
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0010.002
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0010.001
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.127
GPT teacher head0.439
Teacher spread0.312 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations191
Published2021
Admission routes1
Has abstractyes

Explore more

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