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Record W3199009271 · doi:10.1007/s00335-021-09908-x

Importing genetically altered animals: ensuring quality

2021· review· en· W3199009271 on OpenAlexafffund
Marie‐Christine Birling, Martin Fray, Petr Kašpárek, J. Kopkanova, Marzia Massimi, Rafaele Matteoni, Lluı́s Montoliu, Lauryl M. J. Nutter, Marcello Raspa, Jan Rozman, Edward J. Ryder, Ferdinando Scavizzi, Vootele Võikar, Sara Wells, Guillaume Pavlovic, Lydia Teboul

Bibliographic record

VenueMammalian Genome · 2021
Typereview
Languageen
FieldVeterinary
TopicAnimal testing and alternatives
Canadian institutionsSickKids FoundationToronto Centre for PhenogenomicsHospital for Sick Children
FundersCzech Centre for Phenogenomics, Institute of Molecular Genetics of the Czech Academy of SciencesMedical Research CouncilPHENOMINMinisterio de Ciencia e InnovaciónJane ja Aatos Erkon SäätiöEuropean Regional Development FundConsejería de Economía, Innovación, Ciencia y Empleo, Junta de AndalucíaBiocenter FinlandUniversité de StrasbourgInstitut National de la Santé et de la Recherche MédicaleAkademie Věd České RepublikyCentre National de la Recherche ScientifiqueMinisterstvo Školství, Mládeže a TělovýchovyWellcome TrustAgence Nationale de la RechercheNational Institutes of HealthOntario GenomicsGenome CanadaWellcome
KeywordsQuality (philosophy)DocumentationBiologyAnimals laboratoryHuman geneticsData scienceComputational biologyRisk analysis (engineering)Computer scienceGeneticsBusinessMedicineResearch methodology

Abstract

fetched live from OpenAlex

The reproducibility of research using laboratory animals requires reliable management of their quality, in particular of their genetics, health and environment, all of which contribute to their phenotypes. The point at which these biological materials are transferred between researchers is particularly sensitive, as it may result in a loss of integrity of the animals and/or their documentation. Here, we describe the various aspects of laboratory animal quality that should be confirmed when sharing rodent research models. We also discuss how repositories of biological materials support the scientific community to ensure the continuity of the quality of laboratory animals. Both the concept of quality and the role of repositories themselves extend to all exchanges of biological materials and all networks that support the sharing of these reagents.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.001
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: none
GenreCandidate signal: Review · Consensus signal: Review
Teacher disagreement score0.991
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.001
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0020.001
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0010.001
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0010.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.464
GPT teacher head0.498
Teacher spread0.034 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designNot applicable
Domainnot available
GenreReview

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations8
Published2021
Admission routes2
Has abstractyes

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