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Record W3200304290 · doi:10.1002/sct3.13007

Results of a Multicenter Evaluation of a Rapid Flow Cytometry Potency Assay for Cryopreserved Cord Blood Units: A BEST Collaborative Study

2021· article· en· W3200304290 on OpenAlexaff
Renée Bazin, Carl Simard, Diane Fournier, Patrick Trépanier

Bibliographic record

VenueStem Cells Translational Medicine · 2021
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicSingle-cell and spatial transcriptomics
Canadian institutionsHéma-Québec
Fundersnot available
KeywordsPotencyCord bloodFlow cytometryCryopreservationAndrologyMedicineImmunologyChemistryBiologyIn vitroBiochemistryCell biology

Abstract

fetched live from OpenAlex

The current gold standard for cord blood unit (CBU) potency assessment, the colony-forming unit assay (CFU), shows significant variability between laboratories and results in a substantial delay before product release. We recently developed a rapid flow cytometry assay based on the measurement of intracellular STAT5 phosphorylation in CD34+ cord blood stem cells in response to IL-3 stimulation and completed a full method validation of this IL-3-pSTAT5 assay. In partnership with the BEST Collaborative group and worldwide participants from public cord blood banks and stem cells labs, a multicenter blinded study was conducted to provide an international testing ground for the assay, to evaluate its inter-laboratory reliability, and to obtain constructive feedback from expert users. Ten CBU samples cryopreserved in tubes and all necessary reagents were sent to 15 participating sites. Of the ten samples, eight were from potent CBUs (normal) and two from units subjected to extreme warming events (abnormal). Participants were asked to execute the protocol and submit their results. Thirteen of 15 participants returned results. All normal samples were correctly identified by each participant, except for one sample from one participant. Of the two abnormal samples, one was correctly identified by all participants and one was correctly identified by 7 of 10 participants. The coefficient of variation (CV) of normal samples between all participants was 8.9% with an intraclass correlation coefficient (ICC) of 0.8871. All participants completed the study without any major issue and without prior training other than the provided protocol and video. Sample normality identification is satisfactory and coherent with our validation results. The CV between participants is also satisfactory, especially for a CBU potency assay using flow, given that both this type of assay and this method are known for their high variability. While there are some important milestones yet to be achieved with the IL-3-pSTAT5 assay, this study is an important step toward the implementation of the assay, which could have a significant impact on the time before release of CBUs and, therefore, serving the patient's best interest.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.040
Threshold uncertainty score0.603

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.058
GPT teacher head0.309
Teacher spread0.251 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2021
Admission routes1
Has abstractyes

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