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Record W3202927809 · doi:10.1038/s41597-021-01006-6

AusTraits, a curated plant trait database for the Australian flora

2021· article· en· W3202927809 on OpenAlexaff
Daniel S. Falster, Rachael V. Gallagher, Elizabeth Wenk, Ian J. Wright, Dony Indiarto, Samuel C. Andrew, Caitlan Baxter, James R. Lawson, Stuart Allen, Anne Fuchs, Anna M. Monro, Fonti Kar, Mark A. Adams, Collin W. Ahrens, Matthew Alfonzetti, Tara Angevin, Deborah M. G. Apgaua, Stefan K. Arndt, Owen K. Atkin, Joe Atkinson, Tony D. Auld, Andrew G. Baker, Maria von Balthazar, A. R. Bean, Chris J. Blackman, Keith J. Bloomfield, David M. J. S. Bowman, Jason G. Bragg, Timothy J. Brodribb, Genevieve Buckton, Geoff Burrows, Elizabeth Caldwell, James Camac, Raymond J. Carpenter, Jane A. Catford, Gregory R. Cawthray, Lucas A. Cernusak, Gregory Chandler, Alex R. Chapman, David Cheal, Alexander W. Cheesman, Si-Chong Chen, Brendan Choat, Brook Clinton, Peta L. Clode, Helen G. Coleman, William K. Cornwell, Meredith Cosgrove, Michael D. Crisp, Erika Cross, Kristine Y. Crous, Saul A. Cunningham, Timothy J. Curran, Ellen M. Curtis, Matthew I. Daws, Jane L. DeGabriel, Matthew D. Denton, Ning Dong, Pengzhen Du, Honglang Duan, David H. Duncan, Richard P. Duncan, Marco F. Duretto, John M. Dwyer, C.R. Edwards, Manuel Esperón‐Rodríguez, John R. Evans, Susan E. Everingham, Claire Farrell, Jennifer Firn, Carlos Roberto Fonseca, Ben J. French, Doug Frood, Jennifer L. Funk, Sonya R. Geange, Oula Ghannoum, Sean M. Gleason, Carl R. Gosper, Emma F. Gray, Philip K. Groom, Saskia Grootemaat, C. L. Gross, Greg R. Guerin, Lydia K. Guja, Amy K. Hahs, Matthew Tom Harrison, Patrick E. Hayes, Martin L. Henery, Dieter F. Hochuli, Jocelyn Howell, Guomin Huang, Lesley Hughes, John M. Huisman, Jugoslav Ilic, Ashika Jagdish, Daniel Jin, Gregory J. Jordan, Enrique Jurado, John Kanowski, Sabine Kasel, Jürgen Kellermann, Belinda Kenny, Michele Kohout, Robert M. Kooyman, Martyna M. Kotowska, Hao Ran Lai, Étienne Laliberté, Hans Lambers, Byron B. Lamont, Robert Lanfear, Frank van Langevelde, Daniel C. Laughlin, Bree-Anne Laugier-Kitchener, Susan G. W. Laurance, Caroline E. R. Lehmann, Andrea Leigh, Michelle R. Leishman, Tanja I. Lenz, Brendan J. Lepschi, James D. Lewis, Felix K. S. Lim, Udayangani Liu, Janice M. Lord, Christopher H. Lusk, Cate Macinnis‐Ng, Hannah McPherson, Susana Magallón, Anthony Manea, Andrea M. López‐Martínez, Margaret M. Mayfield, James K. McCarthy, Trevor L. Meers, Marlien van der Merwe, Daniel J. Metcalfe, Per Milberg, Karel Mokany, Angela T. Moles, Ben D. Moore, Nicholas Moore, John W. Morgan, William K. Morris, Annette Muir, Samantha Munroe, Áine Nicholson, Dean Nicolle, Adrienne B. Nicotra, Ülo Niinemets, Tom North, Andrew O’Reilly‐Nugent, Odhran S. O’Sullivan, Brad Oberle, Yusuke Onoda, Mark K. J. Ooi, Colin P. Osborne, Grazyna Paczkowska, Burak K. Pekin, Caio Guilherme Pereira, Catherine Marina Pickering, Melinda Pickup, Laura J. Pollock, Pieter Poot, Jeff R. Powell, Sally A. Power, I. Colin Prentice, Lynda D. Prior, Suzanne M. Prober, Jennifer Read, Victoria Reynolds, Anna E. Richards, Ben Richardson, Michael L. Roderick, Julieta A. Rosell, Maurizio Rossetto, Barbara Lynette Rye, Paul D. Rymer, Michael A. Sams, Gordon D. Sanson, Hervé Sauquet, Susanne Schmidt, Jürg Schönenberger, Ernst‐Detlef Schulze, Kerrie M. Sendall, Steve J. Sinclair, Benjamin Smith, Renee Smith, Fiona M. Soper, Ben Sparrow, Rachel J. Standish, Timothy L. Staples, Ruby E. Stephens, Christopher Szota, Guy M. Taseski, Elizabeth M. Tasker, Freya Thomas, David T. Tissue, Mark G. Tjoelker, David Y. P. Tng, Félix de Tombeur, Kyle W. Tomlinson, Neil C. Turner, Erik J. Veneklaas, Susanna Venn, Peter A. Vesk, Carolyn Vlasveld, Maria S. Vorontsova, Nigel W. M. Warwick, Lasantha K. Weerasinghe, Jessie A. Wells, Mark Westoby, Matthew White, Nicholas S. G. Williams, Jarrah Wills, Peter G. Wilson, Colin J. Yates, Amy E. Zanne, Graham Zemunik, Kasia Ziemińska

Bibliographic record

VenueScientific Data · 2021
Typearticle
Languageen
FieldEnvironmental Science
TopicSpecies Distribution and Climate Change
Canadian institutionsMcGill UniversityUniversité de Montréal
FundersAustralian Research Data CommonsNSW Department of Planning,Industry and EnvironmentAustralian Research CouncilSoochow UniversityDepartment of Biodiversity, Conservation and AttractionsCentre for Australian National Biodiversity ResearchDepartment of Education and TrainingDepartment of Environment, Land, Water and Planning, State Government of Victoria
KeywordsTaxonTraitScope (computer science)BiologyDatabaseEcologyFlora (microbiology)Field (mathematics)Taxonomic rankGeographyComputer science

Abstract

fetched live from OpenAlex

We introduce the AusTraits database - a compilation of values of plant traits for taxa in the Australian flora (hereafter AusTraits). AusTraits synthesises data on 448 traits across 28,640 taxa from field campaigns, published literature, taxonomic monographs, and individual taxon descriptions. Traits vary in scope from physiological measures of performance (e.g. photosynthetic gas exchange, water-use efficiency) to morphological attributes (e.g. leaf area, seed mass, plant height) which link to aspects of ecological variation. AusTraits contains curated and harmonised individual- and species-level measurements coupled to, where available, contextual information on site properties and experimental conditions. This article provides information on version 3.0.2 of AusTraits which contains data for 997,808 trait-by-taxon combinations. We envision AusTraits as an ongoing collaborative initiative for easily archiving and sharing trait data, which also provides a template for other national or regional initiatives globally to fill persistent gaps in trait knowledge.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.005
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Dataset · Consensus signal: Dataset
Teacher disagreement score0.023
Threshold uncertainty score0.062

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.005
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0080.011
Science and technology studies0.0010.000
Scholarly communication0.0020.002
Open science0.0010.002
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0190.009

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.163
GPT teacher head0.318
Teacher spread0.155 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreDataset

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations199
Published2021
Admission routes1
Has abstractyes

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