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Record W3208185003 · doi:10.1371/journal.pmed.1003844

Medical journal requirements for clinical trial data sharing: Ripe for improvement

2021· article· en· W3208185003 on OpenAlexaff
Florian Naudet, Maximilian Siebert, Claude Pellen, Jeanne Fabiola Gaba, Cathrine Axfors, Ioana A. Cristea, Valentin Danchev, Ulrich Mansmann, Christian Ohmann, Joshua D. Wallach, David Moher, John P. A. Ioannidis

Bibliographic record

VenuePLoS Medicine · 2021
Typearticle
Languageen
FieldDecision Sciences
TopicScientific Computing and Data Management
Canadian institutionsOttawa HospitalUniversity of Ottawa
FundersU.S. Food and Drug AdministrationSvenska LäkaresällskapetUppsala UniversitetAgence Nationale de la RechercheLaura and John Arnold Foundation
KeywordsClinical trialData sharingMedicineMedical researchMEDLINEMedical physicsComputer scienceIntensive care medicineAlternative medicineInternal medicinePathologyPolitical science

Abstract

fetched live from OpenAlex

In some science, technology, engineering, and mathematics (STEM) fields, data sharing is the norm (e.g., physics or space science).However, this is currently not the case in biomedicine, except for certain exceptions in areas such as genomics.For therapeutic research, data sharing is expected to maximize the value of research for clinical practice by means of greater transparency and opportunities for external researchers to reanalyze, synthesize, replicate, and build upon previous evidence.Examples include reanalyses, secondary analyses, individual patient data (IPD) meta-analyses, and methodological evaluations.Maximizing the efficient use of clinical research data is important in the development of new therapeutic options, including treatments for the Coronavirus Disease 2019 (COVID-19). Summary points• Efficient sharing and reuse of data from clinical trials are critical in advancing medical knowledge and developing improved treatments.• We believe that the International Committee of Medical Journal Editors (ICMJE) clinical trial data sharing policy is currently inadequate.• Although data sharing plans help increase transparency, they do not ensure that data are shared, and they are often inadequately implemented.• We believe that the ICMJE should adapt a stronger policy on data sharing that is enforced rigorously in all ICMJE members and affiliated journals.• The policy should include a strong evaluation component to ensure that all clinical trial data are shared, their value maximized, and data producers incentivized.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.790
metaresearch head score (Gemma)0.913
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesMetaresearch
Consensus categoriesMetaresearch
DomainCandidate signal: Reproducibility · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.210
Threshold uncertainty score0.259

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.7900.913
Meta-epidemiology (narrow)0.0020.008
Meta-epidemiology (broad)0.0100.012
Bibliometrics0.0160.031
Science and technology studies0.0070.014
Scholarly communication0.0380.047
Open science0.0170.023
Research integrity0.0280.028
Insufficient payload (model declined to judge)0.0710.050

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.819
GPT teacher head0.604
Teacher spread0.215 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; the direct Gemma label and the distilled Codex classifier agree on what is shown here.

Study designNot applicable
DomainReproducibility
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations46
Published2021
Admission routes1
Has abstractyes

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