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Record W3211120245 · doi:10.5281/zenodo.5046661

ExploreASL/ExploreASL: ExploreASL v1.7.0

2021· article· en· W3211120245 on OpenAlexaff
Henk Mutsaerts, Michael Stritt, Jan Petr, Mathijs Dijsselhof, MauricePasternak, Beatriz Padrela, luislorenzini, Pieter Vandemaele, yevap, P. Groot

Bibliographic record

VenueZenodo (CERN European Organization for Nuclear Research) · 2021
Typearticle
Languageen
FieldComputer Science
TopicTopic Modeling
Canadian institutionsUniversity of Toronto
Fundersnot available
KeywordsComputer science

Abstract

fetched live from OpenAlex

ExploreASL v1.7.0 Versions included software Versions included &amp; used third-party tools (see <code>/External/README_SPM.txt</code>): SPM12 7219 CAT12 r1615 LST 2.0.15 Feature improvements Issue #455: Automatically compare results of TestDataSets with a saved reference results Issues #480, #623, #649, #661: Restructure <code>x</code>: <code>x.opts</code> (input arguments and their derivatives), <code>x.dir</code> (directories), <code>x.settings</code> (mostly booleans for pipeline settings), <code>x.dataset</code> (dataset related fields), <code>x.external</code>, ... Issue #572: Restructure JSON handling during NiFTI to BIDS import Issue #580: Add parsing of Gold Standard Phantoms <strong>ASL-DRO</strong> Issues #588, #612: <code>ExploreASL</code> reads folders and automatically searches for <strong>sourceStructure</strong>, <strong>studyPar</strong> and <strong>dataPar</strong> JSON files Issue #600: Put participants.tsv to the derivatives folder during import to legacy ExploreASL format Issue #602: Remove option for cloning the NIfTI output after import as BIDS directory is a read-only archive Issue #603: Give ExploreASL version in JSON files after BIDS to Legacy conversion Issue #631: Remove repeated warnings Issue #632: Add comparison script for untouched NIfTI comparison Issue #643: <code>bids.layout</code>: avoid printing the same warning repetitively in case multiple scans in a data set have the same issue Issue #656: Improve warnings (data loading) Bug fixes Issue #583: Proper testing of flavors using ExploreASL_Master Issue #584: Print the subject name depending on the existence of its definition in <code>x.SUBJECT</code> to avoid crashes for error reporting in the population module Issue #586: Avoid crashing <code>xASL_adm_GetPopulationSessions</code> if no sessions are found Issue #591: <strong>MultiTE</strong> import puts TE before PLD in the time series and corrects the JSON output Issue #618: Add session name to all M0Check and ASLCheck QC files in the Population folder Issue #620: <code>xASL_adm_GzipAllFiles</code>: Allow spaces in an input path for macOS/Linux Issue #625: Fix bug related to session format Issue #627: Remove a BIDS fiels and BIDS2Legacy should crash and show you why it crashed Issue #628: Fix parsing sessions and runs for converting rawdata to derivatives Issue #630: Move creation of population folder Issue #646: Improve BIDS warnings Issue #652: <code>xASL_vis_CreateVisualFig</code>: allow empty overlays Issue #659: <code>xASL_stat_PrintStats</code>: Fix visits bug (legacy format) Issue #655: <code>xASL_adm_GetPopulationSessions</code> gave incorrect warnings Issue #666: Warning when multiple <code>dataPar*.json</code> or <code>studyPar*.json</code> or <code>sourcestructure*.json</code> are present Issue #670: Fix warnings and behavior of <code>ExploreASL_Initialize</code> Other improvements Issue #465: Add projects to acknowledgments Issue #615: Add change log to documentation Issue #637: Restyle ExploreASL change log

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.001
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow), Science and technology studies, Scholarly communication, Insufficient payload (model declined to judge)
Consensus categoriesInsufficient payload (model declined to judge)
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.931
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.001
Science and technology studies0.0020.000
Scholarly communication0.0020.001
Open science0.0030.003
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0030.009

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.075
GPT teacher head0.249
Teacher spread0.174 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; both teacher heads agree on what is shown here.

Study designNot applicable
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations0
Published2021
Admission routes1
Has abstractyes

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