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Record W3211360753 · doi:10.3389/ffgc.2021.765871

Quantitative Disease Resistance to White Pine Blister Rust at Southwestern White Pine’s (Pinus strobiformis) Northern Range

2021· article· en· W3211360753 on OpenAlex
Jeremy S. Johnson, Richard A. Sniezko

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

aboutThe title or abstract carries a Canadian signal from the geographic lexicon.
no affNo Canadian affiliation: this work is invisible to an affiliation-only frame.
No Canadian affiliation. An affiliation-only frame, the usual design, would never have seen this work. It is one of the works that make the case for inverting the frame.

Bibliographic record

VenueFrontiers in Forests and Global Change · 2021
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicYeasts and Rust Fungi Studies
Canadian institutionsnot available
FundersNational Science Foundation
KeywordsBiologyColonizationWhite (mutation)InoculationBotanyResistance (ecology)Plant disease resistanceHorticultureEcologyGene

Abstract

fetched live from OpenAlex

White pine blister rust, caused by the non-native, invasive fungal pathogen Cronartium ribicola , is a significant cause of mortality in white pines ( Pinus subgenus Strobus) in North America. Along with climate-driven range contraction, mortality from blister rust can seriously impact the abundance and distribution of the nine white pine species native to the United States and Canada. Very little evaluation of this disease in southwestern white pine ( Pinus strobiformis) has been previously undertaken, but genetic resistance to the disease has been documented, including major gene resistance (MGR) conferred by a dominant R gene. Data is emerging suggesting that the species also has quantitative disease resistance (QR). Our results suggest QR occurs at low frequency, with perhaps 10% of trees having a moderate level (> 35% survival). We assessed progeny arrays from 40 P. strobiformis families (1873 seedlings), originating from three populations, inoculated with C. ribicola. Subsequently, the seedlings were assessed for signs, symptoms and resulting impact in a common garden trial over a 7.5-year period to determine the types and frequency of resistance in a portion of this species’ range. There was a high incidence of both stem symptoms and mortality in the P. strobiformis families tested, and families ranged in survival from 0 to 84.6%. Three families had > 70% survival, representing perhaps the highest documented QR to date in a North American white pine species. Approximately 29.1% of the 441 surviving seedlings showed no stem symptoms, and of the approximately 70.8% of seedlings surviving with infections only few (24 of 316) had infections of moderate to high severity. QR traits associated with improved survival were primarily related to lower severity of infection, a reduced number of stem symptoms, and an increased number of bark reactions. Despite the high overall susceptibility, the presence of QR appears to be at a frequency and level useful to forest managers involved in restoration and reforestation efforts.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.077
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.016
GPT teacher head0.251
Teacher spread0.235 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it