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Record W3212720476 · doi:10.1101/2021.10.27.466174

The colonial legacy of herbaria

2021· preprint· en· W3212720476 on OpenAlexaff
Daniel Park, Xiao Feng, Shinobu Akiyama, Marlina Ardiyani, Neida Avendaño, Zoltán Barina, Blandine Bärtschi, Manuel J. Belgrano, Julio Betancur, Roxali Bijmoer, Ann Bogaerts, Asunción Cano, Jiří Danihelka, Arti Garg, David E. Giblin, Rajib Gogoi, Alessia Guggisberg, Marko Hyvärinen, Shelley James, R.J. Sebola, Tomoyuki Katagiri, Jonathan Kennedy, Tojibaev Sh. Komil, Byoung‐Yoon Lee, Serena M. L. Lee, Donatella Magri, Rossella Marcucci, Siro Masinde, Denis G. Melnikov, Patrik Mráz, Wiesław Mułenko, Paul M. Musili, Geoffrey Mwachala, Burrell E. Nelson, Christine Niezgoda, Carla Novoa, Sylvia Orli, Alan Paton, Serge Payette, Kent D. Perkins, Maria Jimena Ponce, Heimo Rainer, L. Rasingam, Himmah Rustiami, N.M. Shiyan, Charlotte Sletten Bjorå, James Solomon, Fred W. Stauffer, Alex Sumadijaya, Mélanie Thiébaut, Barbara M. Thiers, Hiromi Tsubota, Alison Vaughan, Risto Virtanen, Timothy J. S. Whitfeld, Dianxiang Zhang, Fernando O. Zuloaga, Charles C. Davis

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2021
Typepreprint
Languageen
FieldAgricultural and Biological Sciences
TopicPlant and animal studies
Canadian institutionsUniversité Laval
FundersU.S. Forest ServiceNERC Environmental Bioinformatics Centre
KeywordsHerbariumDigitizationColonialismGlobeBiodiversityGeographyHistoryNatural historyEthnologyEcologyArchaeologyBiologyEngineering

Abstract

fetched live from OpenAlex

Abstract Herbarium collections shape our understanding of the world’s flora and are crucial for addressing global change and biodiversity conservation. The formation of such natural history collections, however, are not free from sociopolitical issues of immediate relevance. Despite increasing efforts addressing issues of representation and colonialism in natural history collections, herbaria have received comparatively less attention. While it has been noted that the majority of plant specimens are housed in the global North, the extent of this disparity has not been rigorously quantified to date. Here, by analyzing over 85 million specimen records and surveying herbaria across the globe, we assess the colonial legacy of botanical collections and how we may move towards a more inclusive future. We demonstrate that colonial exploitation has contributed to an inverse relationship between where plant biodiversity exists in nature and where it is housed in herbaria. Such disparities persist in herbaria across physical and digital realms despite overt colonialism having ended over half a century ago, suggesting ongoing digitization and decolonization efforts have yet to alleviate colonial-era discrepancies. We emphasize the need for acknowledging the inconvenient history of herbarium collections and the implementation of a more equitable, global paradigm for their collection, curation, and use.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.004
metaresearch head score (Gemma)0.013
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesScience and technology studies
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Theoretical or conceptual · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.997
Threshold uncertainty score0.036

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0040.013
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0020.005
Science and technology studies0.0030.004
Scholarly communication0.0030.002
Open science0.0010.003
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0040.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.025
GPT teacher head0.199
Teacher spread0.174 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

Study designTheoretical or conceptual
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations11
Published2021
Admission routes1
Has abstractyes

Explore more

Same venuebioRxiv (Cold Spring Harbor Laboratory)→Same topicPlant and animal studies→French-language works237,207→