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Learning Similarity via Subjective Evaluations and Deep Features of Histopathology Images

2021· article· en· W4200124817 on OpenAlexaff
S. Maryam Hosseini, Morteza Babaie, Hamid R. Tizhoosh

Bibliographic record

Venue2021 IEEE 21st International Conference on Bioinformatics and Bioengineering (BIBE) · 2021
Typearticle
Languageen
FieldComputer Science
TopicAI in cancer detection
Canadian institutionsUniversity of Waterloo
Fundersnot available
KeywordsSimilarity (geometry)Artificial intelligenceComputer sciencePattern recognition (psychology)InferenceEuclidean distanceFuzzy logicImage (mathematics)Computer visionMachine learningData mining

Abstract

fetched live from OpenAlex

Visual similarity estimation for histopathology images plays a key role in many medical imaging tasks, especially in image search and retrieval. All image similarity evaluation approaches employ distance-based metrics to quantify the degree of (dis) similarity. However, it has always been challenging to numerically estimate the similarity between two images, which is compatible with subjective assessment of the human operator, i.e., physicians such as radiologists and pathologists. Relying only on distance calculations through Euclidean, Manhattan, Hamming, and cosine distances does not provide us with the result that can be translated to human judgment in linguistic terms and/or in a normalized range. There is a need for a reliable image similarity measurement compatible with the human assessment with minimum possible conflict. This work proposes a new scheme that evaluates the similarity between a pair of histopathology images close to human reasoning using a fuzzy-logic approach. To this end, we developed a web application to interface with users and to collect descriptive image similarity data for training and testing purposes. We designed an adaptive neuro-fuzzy inference system (ANFIS) to model the vague and uncertain nature of user image assessment for the histopathology image comparison task. The experimental results show that the trained ANFIS can estimate the image similarity with acceptable accuracy and consistent with the user evaluations.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.003
metaresearch head score (Gemma)0.013
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.003
Threshold uncertainty score0.016

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0030.013
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0020.001
Science and technology studies0.0000.001
Scholarly communication0.0010.001
Open science0.0000.001
Research integrity0.0010.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.019
GPT teacher head0.270
Teacher spread0.251 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2021
Admission routes1
Has abstractyes

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