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Record W4205236477 · doi:10.22215/etd/2021-14744

Investigating the Role of Porcupine and WNTless: Components of WNT Signalling Pathway in Response to Endoplasmic Reticulum, Oxidative, Hypoxia and Environmental Toxins Stesses

2021· dissertation· en· W4205236477 on OpenAlexaff
Rowida Mohamed

Bibliographic record

Venuenot available
Typedissertation
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicWnt/β-catenin signaling in development and cancer
Canadian institutionsCarleton University
Fundersnot available
KeywordsWnt signaling pathwayWNT3ACell biologyBiologyEndoplasmic reticulumUnfolded protein responseSignal transduction

Abstract

fetched live from OpenAlex

Porcupine (PORCN) and WNTless (WLS) are factors that control the production of WNT; a protein involved in the early stages of colon cancer development.The WNT proteins play a role in stem cell development and cell differentiation.However, the response of PORCN and WLS to stressors remains to be studied.Previously, we investigated how modifications of PORCN and WLS result in changes in WNT expression and secretion from cells under stress conditions that are found in the tumor microenvironment (hypoxia, oxidative stress, endoplasmic reticulum (ER) stress).The mRNA and protein expression of both PORCN and WLS were notably altered with treatments in human colon cancer (HCT116) cells and human intestinal epithelial (HIEC-6) cells.Our results demonstrated significant changes in expression, which led us to investigate the role of different transcription factors during stresses including (GRP78, HIF1α, NFE2L1, NFEL2L2 and MT1).These transcription factors were altered both at levels of the translation and transcription, when overexpressed by PORCN, WLS and WNT3A.WNT and PORCN levels significantly increased at translation and transcriptional levels when overexpressed by PORCN, WLS and WNT3A.WNT and PORCN undergo palmitoyleation; a modification implicated in cancer cell signalling.The inhibition of palmitoyleation by 2-bromohexdecanoic acid (2-BHDA) resulted in a decrease in the modified forms of PORCN in HCT116 cells.Furthermore, the data showed that palmitoyleation plays an essential role in the expression of WNT proteins; specifically, inhibiting WNT3A and decreasing WLS protein expression in HCT116 cells.However, WLS and WNT3A are modified by N-linked glycosylation.Emerging evidence indicates the critical role of glycosylation in tumor aggressiveness, progression, and metastasis.Cell I would like to extend my thanks to my department.The lab coordinators Mastaneh

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.003

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.008
GPT teacher head0.217
Teacher spread0.209 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2021
Admission routes1
Has abstractyes

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