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Record W4205541410 · doi:10.1109/tim.2021.3135531

Novel Field-Effect Transistor Sensor for DNA Storage Monitoring

2021· article· en· W4205541410 on OpenAlexafffund
Abbas Panahi, Morteza Ghafar-Zadeh, Anthony Scimè, Sebastian Magierowski, Ebrahim Ghafar‐Zadeh

Bibliographic record

VenueIEEE Transactions on Instrumentation and Measurement · 2021
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicAdvanced biosensing and bioanalysis techniques
Canadian institutionsYork University
FundersMitacs
KeywordsJFETDNAComputer scienceAlgorithmTransistorElectrical engineeringBiologyEngineeringField-effect transistorGenetics

Abstract

fetched live from OpenAlex

This article presents a novel open gate junction field-effect transistor (OG-JFET)-based sensor that can be used for various life science applications including deoxyribonucleic acid (DNA) storage monitoring. We put forward the design, modeling, implementation, and characterization of OG-JFET sensor using a foundry process through CMC Microsystems. We also demonstrate and discuss the functionality and applicability of the proposed sensor for monitoring DNA samples suitable for DNA storage applications. Synthetic storage has emerged as an intriguing data storage solution with high density and long-term preservation potential. Most common modalities include the conversion of digital data into synthesized nucleotides, the physical storage of DNA materials, and reading out the data via sequencing and other computational processes. Among these, this article tackles the challenge of physical storage monitoring of DNA materials by developing a sensor for measurement of DNA samples in dry conditions. The proposed sensor reveals a linear response of sensor toward DNA concentration in ultra-pure water. Across a 0.7 mm2sensing area, a DNA mass concentration from approximately 100–400 ng/$\mu \text{L}$has been detected using OG-JFET demonstrating a sensitivity of 30$\mu \text{A}$/(ng/$\mu \text{L}$). These performance quantities imply a promising role for OG-JFETs in emerging biotechnology applications including DNA storage monitoring.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.003

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.001
Open science0.0010.000
Research integrity0.0010.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.029
GPT teacher head0.288
Teacher spread0.259 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations9
Published2021
Admission routes2
Has abstractyes

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Same venueIEEE Transactions on Instrumentation and MeasurementSame topicAdvanced biosensing and bioanalysis techniquesFrench-language works237,207