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Record W4205775630 · doi:10.1186/s12916-021-02193-0

Circulating inflammatory cytokines and risk of five cancers: a Mendelian randomization analysis

2022· article· en· W4205775630 on OpenAlexafffund
Emmanouil Bouras, Ville Karhunen, Dipender Gill, Jian Huang, Philip Haycock, Marc J. Gunter, Mattias Johansson, Paul Brennan, Timothy J. Key, Sarah J. Lewis, Richard M. Martin, Neil Murphy, Elizabeth A. Platz, Ruth C. Travis, James Yarmolinsky, Verena Zuber, Paul Martin, Michail Katsoulis, Heinz Freisling, Therese Haugdahl Nøst, Matthias B. Schulze, Laure Dossus, Christopher I. Amos, Ari Ahola‐Olli, Saranya Palaniswamy, Minna Männikkö, Juha Auvinen, Karl‐Heinz Herzig, Sirkka Keinänen‐Kiukaanniemi, Terho Lehtimäki, Veikko Salomaa, Olli T. Raitakari, Marko Salmi, Sirpa Jalkanen, CRUK, Marjo-Riitta Jarvelin, Abbas Dehghan, Konstantinos K. Tsilidis

Bibliographic record

VenueBMC Medicine · 2022
Typearticle
Languageen
FieldImmunology and Microbiology
TopicMacrophage Migration Inhibitory Factor
Canadian institutionsSinai Health SystemLunenfeld-Tanenbaum Research InstitutePublic Health OntarioUniversity of Toronto
FundersMedical Research CouncilSt. George's, University of LondonUniversität PotsdamFaculty of Medicine and Health, University of SydneyJohns Hopkins Bloomberg School of Public HealthAgence Nationale de la RechercheNational Institute for Health and Care ResearchSingapore Institute for Clinical SciencesStanley Center for Psychiatric Research, Broad InstituteAgency for Science, Technology and ResearchNational Cancer InstituteUniversity of BristolOulun YliopistoUniversity of TorontoWorld Health OrganizationCancer Research UKUniversity College LondonBritish Heart FoundationMassachusetts General HospitalUniversity Hospitals Bristol NHS Foundation TrustTurun YliopistoUniversity of OxfordNorges Teknisk-Naturvitenskapelige UniversitetImperial College LondonHelsingin YliopistoBroad InstituteJohns Hopkins University
KeywordsMedicineMendelian randomizationOncologyInternal medicineBioinformaticsGeneGeneticsGenotypeGenetic variants

Abstract

fetched live from OpenAlex

BACKGROUND: Epidemiological and experimental evidence has linked chronic inflammation to cancer aetiology. It is unclear whether associations for specific inflammatory biomarkers are causal or due to bias. In order to examine whether altered genetically predicted concentration of circulating cytokines are associated with cancer development, we performed a two-sample Mendelian randomisation (MR) analysis. METHODS: Up to 31,112 individuals of European descent were included in genome-wide association study (GWAS) meta-analyses of 47 circulating cytokines. Single nucleotide polymorphisms (SNPs) robustly associated with the cytokines, located in or close to their coding gene (cis), were used as instrumental variables. Inverse-variance weighted MR was used as the primary analysis, and the MR assumptions were evaluated in sensitivity and colocalization analyses and a false discovery rate (FDR) correction for multiple comparisons was applied. Corresponding germline GWAS summary data for five cancer outcomes (breast, endometrial, lung, ovarian, and prostate), and their subtypes were selected from the largest cancer-specific GWASs available (cases ranging from 12,906 for endometrial to 133,384 for breast cancer). RESULTS: There was evidence of inverse associations of macrophage migration inhibitory factor with breast cancer (OR per SD = 0.88, 95% CI 0.83 to 0.94), interleukin-1 receptor antagonist with endometrial cancer (0.86, 0.80 to 0.93), interleukin-18 with lung cancer (0.87, 0.81 to 0.93), and beta-chemokine-RANTES with ovarian cancer (0.70, 0.57 to 0.85) and positive associations of monokine induced by gamma interferon with endometrial cancer (3.73, 1.86 to 7.47) and cutaneous T-cell attracting chemokine with lung cancer (1.51, 1.22 to 1.87). These associations were similar in sensitivity analyses and supported in colocalization analyses. CONCLUSIONS: Our study adds to current knowledge on the role of specific inflammatory biomarker pathways in cancer aetiology. Further validation is needed to assess the potential of these cytokines as pharmacological or lifestyle targets for cancer prevention.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.066
metaresearch head score (Gemma)0.090
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.066
Threshold uncertainty score0.351

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0660.090
Meta-epidemiology (narrow)0.0020.001
Meta-epidemiology (broad)0.0060.011
Bibliometrics0.0030.003
Science and technology studies0.0010.002
Scholarly communication0.0020.001
Open science0.0030.002
Research integrity0.0020.002
Insufficient payload (model declined to judge)0.0100.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.011
GPT teacher head0.241
Teacher spread0.230 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations186
Published2022
Admission routes2
Has abstractyes

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