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Record W4206000152 · doi:10.1242/jeb.243912

Alpha haemoglobin helps high-altitude deer mice breathe more deeply

2022· article· en· W4206000152 on OpenAlexaboutno aff
Kathryn Knight

Bibliographic record

VenueJournal of Experimental Biology · 2022
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicHigh Altitude and Hypoxia
Canadian institutionsnot available
Fundersnot available
KeywordsPeromyscusEffects of high altitude on humansDeer mouseBreedAltitude (triangle)Low altitudeAnimal scienceBiologyZoologyPhysiologyEcologyAnatomy

Abstract

fetched live from OpenAlex

No self-respecting crime drama would be the same without a liberal sprinkling of blood. Yet, the haemoglobin that gives blood its distinctive shade has a perfectly mundane role, transporting oxygen around the body and returning CO2 to the lungs. The haemoglobin of animals, such as deer mice (Peromyscus maniculatus), that live at high altitude is also specially adapted to pick up oxygen when the air is much thinner than that experienced by species nearer to sea level. But Catherine Ivy from McMaster University, Canada, explains that simply breathing more deeply can also increase the amount of oxygen getting into an animal's body when the air pressure falls: high-altitude deer mice breathe more slowly and deeply than lowland mice. There were also hints that members of the haemoglobin family of proteins that occur in other parts of the body, such as the nervous system, might be able to control how an animal breathes. Could the specialised haemoglobin that allows high-altitude deer mice to carry sufficient oxygen also help the animals breathe more deeply?Ivy and Graham Scott (McMaster University) decided to find out, so they enlisted the help of Zachary Cheviron (University of Montana, USA) and Jay Storz (University of Nebraska, USA) to breed mice that carried specific combinations of the high- and low-altitude haemoglobins, to check how the proteins affected the animals’ breathing. The team, including colleagues from Canada and the USA, collected deer mice from Mount Evans, CO, USA, living at 4350 m, and from Nine Mile Prairie, NB, USA, living at 430 m, before transporting the animals to Cheviron's lab at 978 m in Montana. There, Rena Schweizer, Jonathan Velotta and Shane Campbell-Staton allowed a high-altitude male to have a family with a low-altitude female and those offspring to interbreed before Natalie Gutierrez-Pinto and Chandrasekhar Natarajan (both from University of Nebraska) checked the youngsters’ DNA to be certain which combinations of the high- and low-altitude haemoglobins they carried.Once the mice were a year old, they joined Ivy at McMaster University, where they remained at an altitude of 50 m for 8 weeks before she recorded their breathing as she lowered the air pressure, to simulate the animals climbing in altitude. Then, she transferred the mice to a pressure chamber where she could simulate life at 4300 m and rechecked their breathing after 8 weeks.Sure enough, as the air grew thinner, all of the mice breathed more to compensate for the effective lack of oxygen. However, when Ivy compared the haemoglobin combinations that the mice had inherited with their breathing patterns, it was clear that the animals that had inherited two high-altitude forms of the alpha chain component of haemoglobin were taking particularly slow and deep breaths. In contrast, the mice that only inherited low-altitude versions of the alpha haemoglobin chain breathed more shallowly. And when Ivy compared the breathing patterns of the specially bred mice with the patterns of mice that had arrived directly from the mountains, they were essentially indistinguishable. Having high-altitude versions of the haemoglobin α chain seems to be key to regulating how deer mice breathe.‘Our findings are against the dogma that globins don't affect breathing’, says Ivy, and she is keen to find out whether the red blood cells, or some other tissue, are the source of the haemoglobin α chain that seems to be crucial to the mountain deer mouse's laid-back breathing style.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.003
Threshold uncertainty score0.008

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.001
Scholarly communication0.0010.001
Open science0.0000.000
Research integrity0.0010.002
Insufficient payload (model declined to judge)0.0020.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.010
GPT teacher head0.278
Teacher spread0.268 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations0
Published2022
Admission routes1
Has abstractyes

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