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Record W4206192597 · doi:10.3410/f.2145956.2093074

Faculty Opinions recommendation of Recognition of peptidoglycan from the microbiota by Nod1 enhances systemic innate immunity.

2010· dataset· en· W4206192597 on OpenAlex
Vincenzo Cerundolo, Giorgio Napolitani

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

fundA Canadian funder is recorded on the work.
no affNo Canadian affiliation: this work is invisible to an affiliation-only frame.
No Canadian affiliation. An affiliation-only frame, the usual design, would never have seen this work. It is one of the works that make the case for inverting the frame.

Bibliographic record

VenueFaculty Opinions – Post-Publication Peer Review of the Biomedical Literature · 2010
Typedataset
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicEnterobacteriaceae and Cronobacter Research
Canadian institutionsnot available
FundersUniversity of TorontoUniversity of Warwick
KeywordsPeptidoglycanNOD1Innate immune systemNOD2BiologyMicrobiologyPattern recognition receptorTLR4ImmunologyImmune systemLipopolysaccharideImmunityBacteriaGenetics

Abstract

fetched live from OpenAlex

Humans are colonized by a large bacterial flora (the microbiota) essential for the development of the gut immune system [1][2][3] .A broader role for the microbiota as a major modulator of systemic immunity has been proposed 4,5 , however, evidence and mechanism have remained elusive.We show that the microbiota is a source of peptidoglycan that systemically primes the innate immune system, enhancing killing by bone marrow-derived neutrophils of two important pathogens: Streptococcus pneumoniae and Staphylococcus aureus.This requires signaling via the pattern recognition receptor Nod1 (which recognizes mesoDAP-containing peptidoglycan found predominantly in Gram-negative bacteria), but not Nod2 (which detects peptidoglycan found in Gram-positive and Gram-negative bacteria) or Tlr4 (which recognizes lipopolysaccharide) 6,7 .We demonstrate translocation of peptidoglycan from the gut to neutrophils in the bone marrow and show levels in sera correlate with neutrophil function.In vivo administration of Nod1 ligands is sufficient to restore neutrophil function after microbiota depletion.Nod1 -/-mice show increased susceptibility to early pneumococcal sepsis, demonstrating a role for Nod1 in priming innate defenses facilitating a rapid response to infection.These data establish a mechanism for systemic immunomodulation by the microbiota and highlight potential adverse consequences of microbiota disruption, by broad-spectrum antibiotics, on innate immune defense to infection.Humans are colonized by approximately 10 13 -10 14 bacteria, residing primarily on the mucosal surfaces of the host 8 .Understanding host-bacteria relationships has generally Users may view, print, copy,

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.002
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Dataset · Consensus signal: Dataset
Teacher disagreement score0.032
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.002
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0000.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0020.001
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.021
GPT teacher head0.329
Teacher spread0.308 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it