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Problem Oriented Diagnostic Service for Describing Clinical Cases based on the GraphQL POMR Approach

2021· article· en· W4206514926 on OpenAlexaff
Sabah Mohammed, Jinan Fiaidhi, Darien Sawyer

Bibliographic record

Venue2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) · 2021
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicBiomedical Text Mining and Ontologies
Canadian institutionsLakehead University
Fundersnot available
KeywordsComputer scienceSchema (genetic algorithms)StructuringWorkflowSOAPService (business)Medical diagnosisArtificial intelligenceProcess (computing)Software engineeringWorld Wide WebMachine learningProgramming languageDatabaseMedicine

Abstract

fetched live from OpenAlex

Since late 1960s when Dr. Larry Weed painted the roadmap to the formal process of medical diagnosis and the way it should structured around problem list based on what he calls SOAP note (Subjective, Objective, Assessment and the Plan), no real implementation or integration of his vision in providing the 'glue' to link the number of required layers, including the SOAP structuring, semantics of assessments and workflows, clinical decision support systems logic, task planning and querying each case based on flexible schema. Diagnosis, as Weed put it, a process that can describe a clear, logical and systematic approach for clinical diagnosis based on Weed's approach when a patient encountered a clinical issue. This process need to be modeled a service that can integrate with the other clinical systems and services including the medical record systems. In this article we are proposing such service based on Weeds approach for the clinical diagnosis purposes. The described service starts with a SOAP schema that utilizes the GraphQL standard and its associated toolkits to offer physicians and pre-clerkships the mean for describing diagnosis of clinical cases according to the Weed's approach. Particular attention has been given to processing and refining of the of SOAP diagnosis note through primitives like create, retrieve, update and delete (CRUD).

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.001
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Other design · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.665
Threshold uncertainty score0.542

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.149
GPT teacher head0.348
Teacher spread0.198 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designOther design
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations2
Published2021
Admission routes1
Has abstractyes

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