MétaCan
Menu
Back to cohort

Temporal Graph Representation Learning for Autism spectrum disorder Brain Networks

2021· article· en· W4206597964 on OpenAlexaff
Peng Cao, Guangqi Wen, Lanting Li, Xiaoli Liu, Jinzhu Yang, Osmar R. Zai͏̈ane

Bibliographic record

Venue2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) · 2021
Typearticle
Languageen
FieldNeuroscience
TopicFunctional Brain Connectivity Studies
Canadian institutionsUniversity of Alberta
FundersFundamental Research Funds for the Central UniversitiesNational Natural Science Foundation of China
KeywordsComputer scienceGraph embeddingDynamic functional connectivityGraphAutism spectrum disorderArtificial intelligenceEmbeddingDiscriminative modelAutismFunctional magnetic resonance imagingNeuroimagingCluster analysisRecurrent neural networkPattern recognition (psychology)Artificial neural networkTheoretical computer scienceNeurosciencePsychology

Abstract

fetched live from OpenAlex

Modeling spatio-temporal dynamics in functional brain networks is critical for underlying the functional mechanism of autism spectrum disorder (ASD). In our study, we propose an end-to-end framework called temporal graph representation learning for brain networks, which thoroughly captures spatio-temporal features in resting-state functional magnetic resonance imaging (rs-fMRI) data. Specifically, we first transform rs-fMRI time-series into temporal multi-graph using a sliding window technique. A temporal multi-graph clustering is then designed to eliminate the inconsistency of the temporal multi-graph series. Then, a graph structure aware LSTM (GSA-LSTM) is proposed to capture the spatio-temporal embedding for temporal graphs. The proposed GSA-LSTM can not only capture discriminative features for prediction but also impute the incomplete graphs for the temporal multi-graph series. Extensive experiments on autism brain imaging data exchange (ABIDE) dataset shows the effectiveness of our proposed framework. The results demonstrate that the proposed dynamic brain network embedding learning outperforms the state of-the-art brain network classification models. Furthermore, the obtained clustering results are consistent with the previous neuroimaging-derived evidence of biomarkers for autism spectrum disorder (ASD).

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.003
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Simulation or modeling · Consensus signal: Simulation or modeling
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.007
Threshold uncertainty score0.014

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.003
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0010.001
Science and technology studies0.0000.000
Scholarly communication0.0010.002
Open science0.0010.001
Research integrity0.0010.002
Insufficient payload (model declined to judge)0.0020.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.065
GPT teacher head0.320
Teacher spread0.254 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designSimulation or modeling
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations8
Published2021
Admission routes1
Has abstractyes

Explore more

Same venue2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)Same topicFunctional Brain Connectivity StudiesFrench-language works237,207