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Ubiquitination of the transcription factor c‐maf is mediated by multiple lysine residues (LB188)

2014· article· en· W4210613377 on OpenAlexaff
Zubin Zhang, Guodong Chen, Xin Xu, Jiefei Tong, Kunkun Han, Biyin Cao, Michael F. Moran, Xinliang Mao

Bibliographic record

VenueThe FASEB Journal · 2014
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicPlant Gene Expression Analysis
Canadian institutionsHospital for Sick Children
FundersNational Natural Science Foundation of China
KeywordsLysineUbiquitinTranscription factorMutantBiologyProteasomeChemistryBiochemistryCell biologyAmino acidGene

Abstract

fetched live from OpenAlex

The transcription factor c‐MAF belongs to the family of basic leucine zipper transcription factors including c‐fos and c‐jun. Previous studies suggested that c‐Maf could be polyubiquitinated followed by degradation in the proteasomes, but the mechanism is not defined. Theoretically, any lysine residues in c‐MAF could be ubiquitinated. In the present study, we tried to find out the specific lysine residues mediating c‐MAF ubiquitination. Through a series of mutational screenings from lysine (K) to arginine (R), we found that any single lysine mutation (K to R) failed to prevent c‐MAF ubiquitination, and a single lysine residue failed to mediate c‐MAF ubiquitination, which indicated that multiple lysine residues were required for c‐MAF ubiquitination. Bioinformatics and computing analyses revealed that K85 and K350 could mediate c‐MAF ubiquitination, which was confirmed at the cell‐based assays. However, this duo was not the only pair because the K85R/K350R mutant could also be ubiquitinated. Functionally, both M12 (K85/K350) and W12 (K85R/K350R) mutants increased cyclin D2 promoter‐driven luciferase activity, but they were less potent than the lysine‐free counterpart (M14). Therefore, we demonstrated that c‐MAF ubiquitination is mediated by multiple lysine residues, of which K85 and K350 are sufficient but not the only duo in mediating the c‐MAF ubiquitination. Moreover, c‐MAF was found to be degraded by lysosomes. This study added a novel insight for c‐MAF functional modularity, suggesting that c‐MAF stability is strictly regulated. Grant Funding Source : National Natural Science Foundation of China

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.014
Threshold uncertainty score0.214

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.009
GPT teacher head0.224
Teacher spread0.215 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2014
Admission routes1
Has abstractyes

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