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Record W4211141369 · doi:10.1007/s00705-020-04577-8

Taxonomy of prokaryotic viruses: 2018-2019update from the ICTV Bacterial and Archaeal Viruses Subcommittee

2020· article· en· W4211141369 on OpenAlexaff
Evelien M. Adriaenssens, Matthew B. Sullivan, Petar Knežević, Leonardo Joaquim van Zyl, B. L. Sarkar, Bas E. Dutilh, Poliane Alfenas‐Zerbini, Małgorzata Łobocka, Yigang Tong, J. Rodney Brister, Andrea I. Moreno‐Switt, Jochen Klumpp, Ramy K. Aziz, Jakub Barylski, Jumpei Uchiyama, Robert A. Edwards, Andrew M. Kropinski, Nicola K. Petty, Martha R. J. Clokie, Kushkina Ai, Vera V. Morozova, Siobain Duffy, Annika Gillis, J. Rumnieks, D. İpek Kurtböke, Ніна Чанішвілі, Johannes Wittmann, Rob Lavigne, Ho Bin Jang, David Prangishvili, François Enault, Dann Turner, Minna M. Poranen, Hanna M. Oksanen, Mart Krupovìč

Bibliographic record

VenueArchives of Virology · 2020
Typearticle
Languageen
FieldEnvironmental Science
TopicBacteriophages and microbial interactions
Canadian institutionsUniversity of Guelph
FundersBiotechnology and Biological Sciences Research CouncilNational Science Foundation of Sri LankaNederlandse Organisatie voor Wetenschappelijk OnderzoekAcademy of Finland
KeywordsBiologyVirus classificationVirologyTaxonomy (biology)Computational biologyGeneticsGenomeEcologyGene

Abstract

fetched live from OpenAlex
No abstract in any covered source. Its absence is recorded, not treated as a negative.

No abstract. This is not a gap in this database; OpenAlex has none either. 23.3% of the frame is in this state, and the screen finds HALF as much metaresearch here, so the absence is a measured bias rather than a missing field.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.002
metaresearch head score (Gemma)0.003
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: none
GenreCandidate signal: Other · Consensus signal: none
Teacher disagreement score0.020
Threshold uncertainty score0.040

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0020.003
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0100.007
Science and technology studies0.0020.001
Scholarly communication0.0020.002
Open science0.0010.002
Research integrity0.0010.002
Insufficient payload (model declined to judge)0.0030.003

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.030
GPT teacher head0.230
Teacher spread0.200 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreOther

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations201
Published2020
Admission routes1
Has abstractno

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