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Record W4213044796 · doi:10.1093/botlinnean/boab086

Phylogenomic analysis of<i>Tibouchina s.s.</i>(Melastomataceae) highlights the evolutionary complexity of Neotropical savannas

2021· article· en· W4213044796 on OpenAlexaff
Johanna R. Jantzen, Paulo José Fernandes Guimarães, Leandro Cardoso Pederneiras, Ana Luiza Freitas Oliveira, Pamela S. Soltis

Bibliographic record

VenueBotanical Journal of the Linnean Society · 2021
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicPlant Diversity and Evolution
Canadian institutionsUniversité de Montréal
FundersInternational Association for Plant TaxonomySociety for the Study of EvolutionBotanical Society of AmericaFlorida Museum of Natural HistoryAmerican Philosophical Society
KeywordsMelastomataceaeBiologyPolyphylyCladeEcologyThreatened speciesPhylogenetic treeEvolutionary biologyBiodiversityMonophylyHabitat

Abstract

fetched live from OpenAlex

Abstract The origin of the high biodiversity in the Neotropics remains an unresolved but critical question, especially for the species-rich but understudied savannas of Brazil, such as the campos rupestres and Cerrado. To address this knowledge gap, we leveraged Tibouchina s.s., a clade of flowering plants in Melastomataceae found in the Cerrado and campos rupestres, to uncover the processes that generated the hyper-diverse flora of Neotropical savannas. We used a phylogenomic approach combined with ecological niche modelling and biogeographic analysis to infer the evolutionary processes that have influenced the diversification of Tibouchina s.s. We identified the importance of multiple interacting evolutionary forces, including geographical and ecological divergence, polyploidy and hybridization, and found that Tibouchina s.s. harbours greater diversity than once thought due to polyphyletic species, polyploid species and previously undocumented species. Taken together, these findings support a complex evolutionary history for Tibouchina and underscore the need for continued efforts to generate thoroughly sampled, robust phylogenetic trees for additional plant clades of these threatened Neotropical savannas and for intensive collecting and taxonomic work in these highly diverse but neglected regions.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.870
Threshold uncertainty score0.229

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.001
Bibliometrics0.0000.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0010.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.028
GPT teacher head0.207
Teacher spread0.180 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations13
Published2021
Admission routes1
Has abstractyes

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