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Record W4220878792 · doi:10.1111/pbi.13818

<i>Brassica napus</i> genes <i>Rlm4</i> and <i>Rlm7</i> , conferring resistance to <i>Leptosphaeria maculans</i> , are alleles of the <i>Rlm9</i> wall‐associated kinase‐like resistance locus

2022· article· en· W4220878792 on OpenAlexafffundabout
Parham Haddadi, Nicholas J. Larkan, Angela Van deWouw, Yueqi Zhang, Ting Xiang Neik, Elena Beynon, Philipp E. Bayer, David Edwards, Jacqueline Batley, M. Hossein Borhan

Bibliographic record

VenuePlant Biotechnology Journal · 2022
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicPlant-Microbe Interactions and Immunity
Canadian institutionsUniversity of SaskatchewanAgriculture and Agri-Food Canada
FundersAgriculture and Agri-Food CanadaGrains Research and Development CorporationCanola Council of CanadaSaskatchewan Canola Development Commission
KeywordsLeptosphaeria maculansBiologyLocus (genetics)AlleleGeneGeneticsBrassicaR geneSclerotinia sclerotiorumResistance (ecology)Plant disease resistanceBotanyAgronomy

Abstract

fetched live from OpenAlex

Plant cell surface receptors are at the forefront of defence against pathogens, involved in pathogen sensing through the detection of conserved molecules named pathogen-associated molecular patterns (PAMP) and highly variable pathogen virulence (effector) proteins. The recently reported Brassica napus (canola, oilseed rape) disease resistance gene Rlm9 encodes a wall-associated kinase-like (WAKL) receptor which confers race-specific resistance against races of the blackleg pathogen Leptosphaeria maculans carrying the corresponding effector gene, AvrLm5-9 (Larkan et al., 2020). Rlm4 and Rlm7 are located on B. napus chromosome A07 and genetically tightly linked to Rlm9 (Larkan et al., 2016). The L. maculans effectors AvrLm4-7 and AvrLm7 are small, secreted cysteine-rich proteins encoded by a single locus, AvrLm4-7. A single amino acid change in AvrLm4-7 masks recognition by Rlm4 without affecting Rlm7 function. Here, we report the cloning of Rlm4 and Rlm7, both alleles of the Rlm9 WAKL locus.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.007

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0000.001
Bibliometrics0.0010.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0010.001
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0020.003

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.011
GPT teacher head0.187
Teacher spread0.177 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations40
Published2022
Admission routes3
Has abstractyes

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