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Record W4220930590 · doi:10.1101/2022.03.05.483010

Meta-analysis and experimental re-evaluation of the Boyle van ‘t Hoff relation with osmoregulation modelled by linear elastic principles and ion-osmolyte leakage

2022· preprint· en· W4220930590 on OpenAlexaff
Dominic Olver, Iqra Azam, James D. Benson

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2022
Typepreprint
Languageen
FieldMedicine
TopicErythrocyte Function and Pathophysiology
Canadian institutionsUniversity of Saskatchewan
Fundersnot available
KeywordsOsmolyteTurgor pressureChemistryOsmotic pressureBiological systemBiophysicsMathematicsMaterials scienceBiologyBiochemistry

Abstract

fetched live from OpenAlex

ABSTRACT In this study we challenge the paradigm of using the Boyle van ’t Hoff (BvH) relation to relate cell size as a linear function of inverse extracellular osmotic pressure for short time periods (~5 to 30 mins). We present alternative models that account for mechanical resistance (turgor model) and ion-osmolyte leakage (leak model), which is not accounted for by the BvH relation. To test the BvH relation and the alternative models, we conducted a meta-analysis of published BvH datasets, as well as new experiments using a HepG2 cell line. Our meta-analysis showed that the BvH relation may be assumed of the hypertonic region but cannot be assumed a priori over the hyper- and hypotonic region. Both alternative models perform better than the BvH relation but are nearly indistinguishable when plotted. The return to isotonic conditions plot indicated neither alternative model accurate predicts return volumes for HepG2 cells. However, a combined turgor-leak model accurately predicts both the BvH plot and the return to isotonic conditions plot. Moreover, this turgor-leak model provides a facile method to estimate the membrane-cortex Young’s modulus and the cell membrane permeability to intracellular ions/osmolytes during periods of osmotic challenge, and predicts a novel passive method of volume regulation without the need for ion pumps.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.062
metaresearch head score (Gemma)0.102
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Meta-analysis · Consensus signal: Meta-analysis
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.062
Threshold uncertainty score0.329

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0620.102
Meta-epidemiology (narrow)0.0030.001
Meta-epidemiology (broad)0.0100.039
Bibliometrics0.0060.007
Science and technology studies0.0010.001
Scholarly communication0.0050.002
Open science0.0040.002
Research integrity0.0030.003
Insufficient payload (model declined to judge)0.0040.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.058
GPT teacher head0.270
Teacher spread0.211 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designMeta-analysis
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations1
Published2022
Admission routes1
Has abstractyes

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