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Record W4220932024 · doi:10.1139/cjb-2021-0176

New insight into the roles of lipid transfer protein and seed storage albumin gene families involved in oil and protein accumulation in rapeseed (<i>Brassica napus</i> L.)

2022· article· en· W4220932024 on OpenAlexvenueno aff
Chuanhong Chen, Lunlin Chen, Shuyu Li, Wen Zhai, Dongwei Li, Jun Chen

Bibliographic record

VenueBotany · 2022
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicLipid metabolism and biosynthesis
Canadian institutionsnot available
Fundersnot available
KeywordsRapeseedBiologyPlant lipid transfer proteinsGeneBrassicaceaeBrassicaStorage proteinGene expressionGene familyLipid metabolismBiochemistryBotanyRegulator geneGenetics

Abstract

fetched live from OpenAlex

In rapeseed ( Brassica napus L.), lipid transfer protein (LTP) and seed storage albumin (SSA) gene families are involved in lipid and protein metabolism. Understanding the mechanism of oil biosynthesis has great value to increase oil production. The LTPs and SSA gene families were identified of Brassicaceae. The LTPs were divided into six groups according to their sequences, and LTPs of all five species in Brassicaceae also had the same pattern. The genes at a higher expression level were evenly distributed across five groups except group ii. The gene groups in these two gene families showed different expression patterns, with most of the LTP genes expressed at a higher level at 25 days after flowering (DAF), but SSA genes were highly expressed at 40 DAF stage. Gene Ontology (GO) enrichment analysis of the regulatory genes for LTPs also was performed, including response to biotic stimulus (GO:0009607), generation of precursor metabolites and energy (GO:0006091), electron transport chain (GO:0022900), oxidative phosphorylation (GO:0006119), adenosine triphosphate metabolic process (GO:0046034), and phosphorylation (GO:0016310). These results may facilitate further research to understand the expression patterns and regulatory mechanism of LTPs and SSAs.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.004

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.009
GPT teacher head0.213
Teacher spread0.204 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations1
Published2022
Admission routes1
Has abstractyes

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