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Record W4221073563 · doi:10.1016/j.soilbio.2022.108618

Linking soil microbial community structure to potential carbon mineralization: A continental scale assessment of reduced tillage

2022· article· en· W4221073563 on OpenAlexaff
Elizabeth L. Rieke, Shannon B. Cappellazzi, Michael Cope, Daniel Liptzin, G. Mac Bean, Kelsey L.H. Greub, Charlotte E. Norris, P. W. Tracy, Ezra Aberle, Amanda J. Ashworth, Oscar Bañuelos Tavarez, Andy I. Bary, R. Louis Baumhardt, Alberto Borbón Gracia, Daniel C. Brainard, Jameson R Brennan, Dolores Briones Reyes, Darren Bruhjell, Cameron N. Carlyle, James J.W. Crawford, Cody F. Creech, Steve W. Culman, Bill Deen, Curtis J. Dell, Justin Derner, Thomas F. Ducey, Sjoerd W. Duiker, Miles Dyck, Benjamin H. Ellert, Avelino Espinosa Solorio, Steven J. Fonte, Simon Fonteyne, Ann‐Marie Fortuna, Jamie L. Foster, Lisa M. Fultz, Audrey V. Gamble, Charles M. Geddes, Deirdre Griffin‐LaHue, John H. Grove, Stephen K. Hamilton, Xiying Hao, Zachary D. Hayden, Nora Honsdorf, Julie A. Howe, James A. Ippolito, Gregg A. Johnson, Mark A. Kautz, Newell R. Kitchen, Sandeep Kumar, Kirsten S.M. Kurtz, Francis J. Larney, Katie L. Lewis, Matt Liebman, Antonio López Ramírez, Stephen Machado, Bijesh Maharjan, Miguel Ángel Martínez Gamiño, William E. May, Mitchel P. McClaran, Marshall D. McDaniel, N. Millar, Jeffrey P. Mitchell, Amber Moore, P. Moore, Manuel Mora Gutiérrez, Kelly A. Nelson, Emmanuel C. Omondi, Shannon L. Osborne, Leodegario Osorio Alcalá, Philip Owens, E. M. Pena‐Yewtukhiw, Hanna Poffenbarger, Brenda Ponce Lira, Jennifer R. Reeve, Timothy M. Reinbott, Mark S. Reiter, Edwin L. Ritchey, Kraig L. Roozeboom, Yichao Rui, Amir Sadeghpour, Upendra M. Sainju, Gregg R. Sanford, William F. Schillinger, Robert R. Schindelbeck, Meagan E. Schipanski, Alan J. Schlegel, Kate M. Scow, Lucretia A. Sherrod, Amy L. Shober, Sudeep S. Sidhu, Ernesto Solís Moya, Mervin St. Luce, Jeffrey S. Strock, Andrew E. Suyker, Virginia R. Sykes, Haiying Tao, Alberto Trujillo Campos, Laura L. Van Eerd, Nele Verhulst, Tony J. Vyn, Yutao Wang, Dexter B. Watts, Bryan B. William, David L. Wright, Tiequan Zhang, Cristine L.S. Morgan, C. Wayne Honeycutt

Bibliographic record

VenueSoil Biology and Biochemistry · 2022
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicSoil Carbon and Nitrogen Dynamics
Canadian institutionsUniversity of GuelphUniversity of AlbertaAgriculture and Agri-Food Canada
FundersFoundation for Food and Agriculture ResearchGeneral MillsSamuel Roberts Noble Foundation
KeywordsCminEnvironmental scienceSoil waterMicrobial population biologyMineralization (soil science)Disturbance (geology)Soil carbonEcologyBiologySoil science

Abstract

fetched live from OpenAlex

Potential carbon mineralization (Cmin) is a commonly used indicator of soil health, with greater Cmin values interpreted as healthier soil. While Cmin values are typically greater in agricultural soils managed with minimal physical disturbance, the mechanisms driving the increases remain poorly understood. This study assessed bacterial and archaeal community structure and potential microbial drivers of Cmin in soils maintained under various degrees of physical disturbance. Potential carbon mineralization, 16S rRNA sequences, and soil characterization data were collected as part of the North American Project to Evaluate Soil Health Measurements (NAPESHM). Results showed that type of cropping system, intensity of physical disturbance, and soil pH influenced microbial sensitivity to physical disturbance. Furthermore, 28% of amplicon sequence variants (ASVs), which were important in modeling Cmin, were enriched under soils managed with minimal physical disturbance. Sequences identified as enriched under minimal disturbance and important for modeling Cmin, were linked to organisms which could produce extracellular polymeric substances and contained metabolic strategies suited for tolerating environmental stressors. Understanding how physical disturbance shapes microbial communities across climates and inherent soil properties and drives changes in Cmin provides the context necessary to evaluate management impacts on standardized measures of soil microbial activity.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.098
Threshold uncertainty score0.291

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.007
GPT teacher head0.231
Teacher spread0.224 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations43
Published2022
Admission routes1
Has abstractyes

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