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Record W4225271001 · doi:10.1007/s00338-022-02257-4

Genomic assessment of an endemic Hawaiian surgeonfish, Acanthurus triostegus sandvicensis, reveals high levels of connectivity and fine-scale population structure

2022· article· en· W4225271001 on OpenAlex
Richard R. Coleman, Brian W. Bowen

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

fundA Canadian funder is recorded on the work.
no affNo Canadian affiliation: this work is invisible to an affiliation-only frame.
No Canadian affiliation. An affiliation-only frame, the usual design, would never have seen this work. It is one of the works that make the case for inverting the frame.

Bibliographic record

VenueCoral Reefs · 2022
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGenetic diversity and population structure
Canadian institutionsnot available
FundersR. Howard Webster FoundationUniversity of Hawai'iNational Oceanic and Atmospheric AdministrationHawai'i Sea Grant, University of Hawai'iFord FoundationNational Science Foundation
KeywordsArchipelagoBiologyBiological dispersalEcologyPopulationPopulation genomicsGenomicsGeographyEvolutionary biologyGenomeGeneticsDemography

Abstract

fetched live from OpenAlex

Abstract The Hawaiian Archipelago has served as a natural laboratory to assess genetic connectivity patterns across a broad spectrum of taxonomic and ecological diversity. Almost all these studies were based on a few targeted loci, but technologies now allow us to assess population structure with genomic coverage and greater resolution. Here, we provide a SNP-based analysis for an endemic surgeonfish, Acanthurus triostegus sandvicensis (manini) across the Hawaiian Archipelago and adjacent Johnston Atoll ( N = 461). Based on 3649 SNPs, manini showed population structure in the main Hawaiian Islands, but genetic homogeneity across most of the northwestern extent of the archipelago (overall F ST = 0.033, P < 0.001). Net migration occurred from Johnston Atoll into Hawai‘i, providing further support for Johnston Atoll being a pathway for dispersal (or colonization) into Hawai′i. These results highlight the higher efficacy of genomic sequencing to characterize fine-scale patterns of connectivity relative to a targeted loci approach and, moving forward, may invoke a reassessment of past connectivity studies in a genomics framework.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.540
Threshold uncertainty score0.548

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.015
GPT teacher head0.263
Teacher spread0.248 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it