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Record W4225379303 · doi:10.21203/rs.3.rs-1580079/v1

Control of human cytomegalovirus replication by liver resident natural killer cells

2022· preprint· en· W4225379303 on OpenAlexaff
Calum Forrest, Thomas N. Chase, Antonia O. Cuff, Reza Motallebzadeh, Amir Gander, Brian R Davidson, Paul Griffiths, Victoria Male, Matthew B. Reeves

Bibliographic record

VenueResearch Square · 2022
Typepreprint
Languageen
FieldImmunology and Microbiology
TopicImmune Cell Function and Interaction
Canadian institutionsInstitute of Infection and Immunity
FundersWellcome Trust
KeywordsReplication (statistics)Human cytomegalovirusVirologyCytomegalovirusNatural (archaeology)Control (management)BiologyImmunologyComputer scienceHuman immunodeficiency virus (HIV)VirusHerpesviridaeArtificial intelligenceViral disease

Abstract

fetched live from OpenAlex

Abstract Natural killer (NK) cells are innate immune cells that have been suggested important for control of human cytomegalovirus (HCMV) – an important pathogen in immune suppressed transplant patients. In HCMV seropositive individuals a population of NK cells with adaptive features can expand in peripheral blood and has been shown to have enhanced antiviral function. This is particularly evident following solid organ transplant (SOT) where patients frequently experience episodes of HCMV viremia. In contrast, much less is understood about the identity and function of tissue-resident immune cells in the context of HCMV infection and pathogenesis. In this study, access to tissue-resident immune cells from human organs destined for transplant has enabled us to address this, for the first time. Here we show that human liver-resident (lrNK), like circulating NK (cNK) cells, express increased adaptive markers in HCMV+ individuals. Interestingly, lrNK demonstrated better control of HCMV replication in vitro when compared to cNK cells isolated from the same donor. Furthermore, this control phenotype was elevated if the cells were isolated from HCMV seropositive donors. Crucially, because these studies were performed on perfusates from livers destined for transplantation we could correlate a donor’s lrNK ability to control HCMV in vitro with a reduction in HCMV viraemia in liver transplant recipients in vivo. Finally, we demonstrate that a population of CD2+ NK cells are enriched in patients who did not develop viraemia post-transplant and that loss of control in vitro occurs when CD2 NK cells are depleted or inhibited with anti-CD2 antibodies. Therefore, lrNK have anti-viral activity that could be important for control of HCMV replication in tissue and contribute to better clinical outcomes following organ transplant. Understanding the importance of CD2 expressing populations could have implications for the development of novel therapies aimed at mobilising specific NK cell functions against infections and/or decreasing the ability of HCMV to evade NK responses.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.005

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0020.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.034
GPT teacher head0.352
Teacher spread0.318 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations1
Published2022
Admission routes1
Has abstractyes

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