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Identification of NUAK1/2 Regulators in the Hippo Signaling Pathway

2022· article· en· W4225380867 on OpenAlexafffund
Youchen Song, Mandeep Gill, Siyuan Song, Liliana Attisano

Bibliographic record

VenueThe FASEB Journal · 2022
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicHippo pathway signaling and YAP/TAZ
Canadian institutionsUniversity of Toronto
FundersCanadian Institutes of Health ResearchTerry Fox Research Institute
KeywordsHippo signaling pathwayCell biologyBiologyGene knockdownKinaseTranscription factorCell growthSignal transductionCancer researchCell cultureGeneGenetics

Abstract

fetched live from OpenAlex

The Hippo signaling pathway plays a central role in regulating cell proliferation, differentiation, and tissue size. In response to various upstream regulators, the mammalian STE20‐like protein kinase 1/2 (MST1/2) and large tumor suppressor kinase 1/2 (LATS1/2) phosphorylate Yes‐associated protein (YAP) and transcriptional co‐activator with PDZ‐binding motif (TAZ) to promote their cytoplasmic retention and degradation. Unphosphorylated YAP/TAZ translocate into the nucleus and interact with several transcription factors to regulate gene expression that drives cell growth and migration. Dysregulation of the Hippo pathway causes tissue overgrowth and tumorigenesis and elevated YAP/TAZ levels or activities are positively correlated with progression of almost all solid cancers. The NUAK family kinase 1/2 (NUAK1/2) are members of the AMP‐activated protein kinase‐related kinase family. Our lab showed that NUAK2 negatively regulates the Hippo pathway by preventing LATS‐mediated YAP/TAZ phosphorylation and cytoplasmic sequestration. Moreover, this work showed that loss of NUAK2 attenuates in vivo mammary tumor growth. However, how NUAK1/2 are regulated is poorly understood. Here, we will undertake screens in cancer cell lines to identify upstream and downstream NUAK1/2 regulators and partners. Since, abrogation of NUAK expression blocks cell growth in a context‐dependent manner, my current efforts are being directed towards generating cell lines expressing inducible NUAK1/2 shRNAs. Independent clones have been selected and validated for their knockdown efficiencies and effects on YAP/TAZ downstream target gene expression. Once validated, the selected lines will be subjected to genome‐wide CRISPR screens. We hypothesize that the screens will identify components that enhance or attenuate the effect of NUAKs and will reveal any differential regulators and partners for NUAK1/2. Discovering novel cancer‐relevant NUAK regulators will enhance our understanding of the tumor promoting roles of NUAKs and provide insights into how to target these kinases for better therapeutic outcomes.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.004

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0010.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.013
GPT teacher head0.233
Teacher spread0.221 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations1
Published2022
Admission routes2
Has abstractyes

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