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CTP:phosphocholine cytidylyltransferase alpha regulates nLD biogenesis in Caco2 cells

2022· article· en· W4225386944 on OpenAlexafffund
Michael McPhee, Jong‐Hwa Lee, Graham Dellaire, Steven Pelech, Neale D. Ridgway

Bibliographic record

VenueThe FASEB Journal · 2022
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicLipid metabolism and biosynthesis
Canadian institutionsUniversity of British ColumbiaDalhousie University
FundersCanadian Institutes of Health ResearchIWK Health Centre
KeywordsPhosphocholineEndoplasmic reticulumLipid dropletCell biologyNucleoplasmChemistryBiologyMolecular biologyPhosphatidylcholineBiochemistryPhospholipidNucleolusNucleus

Abstract

fetched live from OpenAlex

Recent investigations reveal that nuclear lipid droplets (nLDs) stimulate lipid metabolic enzymes in response to excess fatty acid loading of cells. For example, in oleate‐treated hepatocytes the rate‐limiting enzyme in the CDP‐choline pathway, CTP:phosphocholine cytidylyltransferase alpha (CCT alpha), is recruited to the surface of nLDs and stimulates the synthesis of phosphatidylcholine (PC). Hepatocyte nLDs derive from ApoB‐free LDs in the lumen of the endoplasmic reticulum that migrate into the nucleoplasm through type I nucleoplasmic reticulum invaginations of the inner nuclear membrane (INM). Once formed inside the nucleus, nLDs recruit proteins CCT alpha, Lipin1 and promyelocytic leukemia (PML) to their surfaces. Endothelial cells of the colon also express ApoB lipoproteins for chylomicron assembly and secretion, so we hypothesized that these cells might also form nLDs in response to excess lipid loading. Indeed, using immunofluorescence confocal microscopy we found that oleate‐treated Caco2 cells formed between 5 to 10 nLDs per cell that recruited both CCT alpha and PML to their surface. CRISPR/Cas9‐mediated CCT alpha knockout Caco2 (CCT alphaKO) cells had significantly fewer but larger cLDs and nLDs compared to wild‐type cells. The percentage of PML‐positive nLDs increased in CCT alphaKO cells, suggesting that CCT alpha and PML compete for access to the nLD surface following oleate treatment. To determine if phosphorylation of CCT alpha regulates translocation to nLDs, phospho‐mimetic and phospho‐null S315/S319 and Y359/S362 mutants were expressed in CCT alphaKO cells and localization to nLDs was measured. In vitro phosphorylation assays of recombinant, dephosphorylated CCT alpha indicated that AMP‐dependent kinase phosphorylated CCT alpha S319, which could be involved in regulating CCT alpha activity on nLDs. In summary, we have demonstrated that oleate treatment induces nLD biogenesis in Caco2 cells and that CCT alpha activity regulates the biogenesis of both nLDs and cLDs.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.004
Threshold uncertainty score0.008

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0010.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0020.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.008
GPT teacher head0.209
Teacher spread0.201 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2022
Admission routes2
Has abstractyes

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