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Specificity of Antibodies for the Identification of Annexin 1 (ANXA1) Protein in Various Types of Cancer

2022· article· en· W4225405809 on OpenAlexaff
Karyn Olascuaga‐Castillo, Susana Rubio‐Guevara, Elena Cáceres‐Andonaire, Dan Altamirano‐Sarmiento, Elena Mantilla‐Rodríguez, Julio Hilario‐Vargas, José Andrés Morgado‐Díaz, Maxim V. Berezovski

Bibliographic record

VenueThe FASEB Journal · 2022
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicS100 Proteins and Annexins
Canadian institutionsUniversity of Ottawa
FundersUniversidad Nacional de Trujillo
KeywordsStainingAntibodyPathologyCancerBiologyAnnexin A1Molecular biologyMedicineAnnexinInternal medicineImmunology

Abstract

fetched live from OpenAlex

Annexins are a well‐characterized multigene family of phospholipid‐binding and membrane‐bound proteins that are Ca2+‐regulated. ANXA1 expression is variable in tumor cells, ranging from high levels to none, which is why it is helpful to know the staining potential of various antibodies against the protein. Our research aims to evaluate the specificity of five antibodies used to detect ANXA1 expression in selecting different types of cancer and normal tissue and the differential specificity between the two groups. We examined a data set composed of 2177 samples from The Human Protein Atlas (HPA) as mentioned, cancer patients:1904 samples, and healthy persons: 273 samples. We examined the specificity of five different antibody types of detecting ANXA1 expression (HPA011271, HPA011272, CAB013023, CAB035987, and CAB058693). The specificity of each antibody against ANXA1 protein was evaluated using a staining scale of 0 ‐ 3.00, where 0 indicates no staining, 0.01‐1.0 low staining, 1.01 ‐ 2.0 medium staining, and 2.01 ‐ 3.00 high staining. Results CAB013023 had the highest staining values for both cancer and healthy samples; thyroid cancer and endometrial cancer had the highest staining values (2.75 and 2.80, respectively). Breast, head and neck, and bladder normal tissues stained the most intensely in healthy samples (3.00 in all three cases). The antibody's specificity for identifying ANXA1 expression suggests that this may be used as a prognosis and treatment marker in cancer.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.002
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.008

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.002
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0020.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0010.000
Insufficient payload (model declined to judge)0.0020.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.016
GPT teacher head0.276
Teacher spread0.260 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations1
Published2022
Admission routes1
Has abstractyes

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