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Record W4229026512 · doi:10.21203/rs.3.rs-1619662/v1

Metabolomic Profiling of Equine Cord Blood Mesenchymal Stromal Cells in Both Early and Late Stages of Culture

2022· preprint· en· W4229026512 on OpenAlexaff
Saba Oji, Cara Ruth Pilgrim, Thomas G. Koch, Pavneesh Madan

Bibliographic record

VenueResearch Square · 2022
Typepreprint
Languageen
FieldMedicine
TopicMesenchymal stem cell research
Canadian institutionsUniversity of Guelph
Fundersnot available
KeywordsMesenchymal stem cellCord bloodMetabolomicsFetal bovine serumStromal cellBiologyMetabolismUmbilical cordCellular metabolismCell biologyAndrologyBioinformaticsCellImmunologyMedicineEndocrinologyBiochemistryCancer research

Abstract

fetched live from OpenAlex

Abstract Introduction: Equine Mesenchymal Stromal Cells (MSC) hold great potential as a future form of cellular therapy. Fetal Bovine Serum (FBS) is used as a supplement MSC culture, but challenges with its use have initiated a desire to create a defined media to expand these cells. MSCs have shown great variability in species, tissue source and passage number. Due to this, to effectively create a replacement for FBS we must better understand how it meets the metabolic needs for each type of MSC. Objectives: The goal of this study is to determine key pathways and differences in pathways between the early and late passages of equine cord blood MSCs. Methods: This study utilized metabolomics to give a snapshot of the metabolism in the long-term culture of equine cord blood MSCs (eCB-MSC) by comparing the profile of plain culture media to spend media. Results: We found two significantly different metabolites between the early and late passage of eCB-MSC, alpha-ketoglutaric acid (p = 0.019) and creatine (p = 0.012). As well, the metabolic results allowed us to perform an enrichment analysis to assess which pathway(s) were most relevant. Conclusion: The two metabolites suggest a difference in metabolism between the early and late passage reflecting different cellular priorities. Insights into the unique metabolism of these cells and how the requirement of the cell differs between the early and late passage may allow the formulation a serum free media tailored to the metabolic needs of eCB-MSC.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.005

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.001
Science and technology studies0.0000.000
Scholarly communication0.0010.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.071
GPT teacher head0.408
Teacher spread0.336 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2022
Admission routes1
Has abstractyes

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