Multi‐layer random walker image segmentation for overlapped cervical cells using probabilistic deep learning methods
Bibliographic record
Abstract
Abstract A method for overlapping cell image segmentation is presented with a focus on multi‐layer image processing in a three‐phase scheme. In the first phase, a convolutional neural network is developed to provide a coarse cell segmentation with multiple output layers to identify cell cytoplasm, locations of cell nuclei, and the background, all as probabilistic image maps for the layer outputs. In the second phase, the probabilistic image maps from the convolutional neural network are used to identify locations of cell nuclei and cell cytoplasm. Then, multi‐layer random walker image segmentation is used with cell nuclei as hard initial seeds and the cytoplasm estimates as soft seeds in a diffusion graph‐based segmentation of the cells. With rough cell segmentation from both the trained convolutional neural network and the multi‐layer random walker graph‐based technique, a third phase combines and refines the cell segmentation using the Hungarian algorithm to optimise the assignment of individual pixel locations for the final cell segmentation. We evaluate the proposed method on cervical cell images generated from the International Symposium on Biomedical Imaging 2014 dataset with results that give a Dice similarity coefficient of 97.2% (compared to 93.2% for competitors) when trained on the generated dataset.
Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.
How this classification was reachedexpand
Full frame machine prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.
Distilled classifier scores by category (both heads)
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.001 | 0.002 |
| Meta-epidemiology (narrow) | 0.001 | 0.001 |
| Meta-epidemiology (broad) | 0.001 | 0.001 |
| Bibliometrics | 0.002 | 0.001 |
| Science and technology studies | 0.000 | 0.000 |
| Scholarly communication | 0.001 | 0.001 |
| Open science | 0.002 | 0.001 |
| Research integrity | 0.001 | 0.001 |
| Insufficient payload (model declined to judge) | 0.002 | 0.001 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".