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Theory and Applications of NMR-Based Metabolomics in Human Disease Diagnosis

2015· book-chapter· en· W423413564 on OpenAlexaff
Abdul‐Hamid Emwas, Jasmeen S. Merzaban, Haçène Serrai

Bibliographic record

VenueGhent University Academic Bibliography (Ghent University) · 2015
Typebook-chapter
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicMetabolomics and Mass Spectrometry Studies
Canadian institutionsUniversity of Manitoba
FundersKing Abdullah University of Science and Technology
KeywordsMetabolomicsHuman diseaseDiseaseComputational biologyProteomicsBiologyBioinformaticsMedicinePathologyBiochemistryGene

Abstract

fetched live from OpenAlex

Metabolomics is a dynamic and emerging research field, joining proteomics, transcriptomics and genomics in affording a comprehensive understanding of biological systems and how these systems are affected by environmental stimuli and/or genetic modification. Metabolomics is particularly helpful for identifying biomarkers of disease processes such as the effects of a high fat diet on cardiovascular disease, providing insight into the interaction between genes and diet. Nuclear Magnetic Resonance (NMR) and Mass spectrometry (MS) are the most common analytical tools in metabolomics research. The high reproducibility of NMR-based techniques makes it superior to other analytical techniques especially in terms of searching for new and novel biomarkers in human diseases. Recently, NMR-based metabolomics approaches have been proposed as a promising and powerful technique for diagnosis of several human diseases. They have been used to investigate a wide range of diseases, through the examination of different kinds of human samples, including urine, blood plasma/serum, blister fluid, saliva, as well as intact tissue biopsies and tissue extracts. However, several factors can influence the metabolic balance within the human body and therefore in samples drawn from the body, including gender, age, fasting, diet, emotional stress, drug administration, physical activity and life style, thus complicating the use of NMR-based metabolomics approaches in diagnosing specific human disease. This chapter highlights the potential applications of NMR-based metabolomics approaches as a promising technique for diagnosis of human diseases.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow), Bibliometrics
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: none
GenreCandidate signal: Other · Consensus signal: none
Teacher disagreement score0.965
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.001
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0140.003
Science and technology studies0.0000.001
Scholarly communication0.0000.000
Open science0.0010.001
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.018
GPT teacher head0.231
Teacher spread0.213 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designNot applicable
Domainnot available
GenreOther

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations9
Published2015
Admission routes1
Has abstractyes

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