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Record W4238389391 · doi:10.1021/jp108343g

Effect of Point Mutations on the Secondary Structure and Membrane Interaction of Antimicrobial Peptide Anoplin

2011· article· en· W4238389391 on OpenAlexaff
Amy Won, Stahs Pripotnev, Annamaria Ruscito, Anatoli Ianoul

Bibliographic record

VenueThe Journal of Physical Chemistry B · 2011
Typearticle
Languageen
FieldImmunology and Microbiology
TopicAntimicrobial Peptides and Activities
Canadian institutionsCarleton University
Fundersnot available
KeywordsChemistryPeptideMembraneMonolayerAntimicrobial peptidesMicelleLipid bilayerVesicleProtein secondary structureBiophysicsAqueous solutionCrystallographyStereochemistryBiochemistryOrganic chemistry

Abstract

fetched live from OpenAlex

Anoplin (GLLKRIKTLL-NH 2 ) is the smallest linear α-helical antimicrobial peptide found naturally to date. Antibacterial and hemolytic properties of anoplin depend strongly on physicochemical properties. Two anoplin derivatives, anoplin-8K (Ano8K, GLLKTIKKLL-NH 2 ) and anoplin-1K5 V8K (Ano1K5 V8K, KLLKVIKLL-NH 2 ), were found to have increased bacterial and low hemolytic activity. In the present work physicochemical properties of these three peptides were studied by UV resonance Raman (UVRR) spectroscopy, Langmuir−Blodgett monolayer technique, and carboxyfluorescein (CF) leakage assay. UVRR data indicated that all three peptides adopt predominantly unordered conformation in aqueous buffer solution. In membrane-mimicking trifluoroethanol, the α-helical content increases for all three peptides with Ano1K5 V8K having the highest α-helix percentage, followed by Ano8K and anoplin. Critical micelle concentrations were found to be similar for all three peptides, and the saturation pressure decreases in the sequence Ano1K5 V8K, anoplin, Ano8K. Critical pressure of insertion was found to be greater for anionic lipid monolayer DPPG than for zwitterionic lipid DPPC indicating preferential adsorption of all three peptides to DPPG. Finally, membrane lytic activities of all three peptides toward various model lipid vesicles were compared through CF leakage assay. Overall the data indicate that antimicrobial activity of anoplin increases with charge, whereas membrane lytic activity correlates with peptides helicity and amphipathicity.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.004

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.007
GPT teacher head0.222
Teacher spread0.215 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations31
Published2011
Admission routes1
Has abstractyes

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