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Investigating the Relationship Between Central Computer Tomography Airway Tree Features and Small Airways Disease in Chronic Obstructive Pulmonary Disease

2021· article· en· W4249428256 on OpenAlexaffabout
Xavier Bauza, Daniel Genkin, J.C. Hogg, J. Bourbeau, Wan C. Tan, Miranda Kirby

Bibliographic record

Venuenot available
Typearticle
Languageen
FieldMedicine
TopicChronic Obstructive Pulmonary Disease (COPD) Research
Canadian institutionsSt. Paul's HospitalToronto Metropolitan University
Fundersnot available
KeywordsAirwayCOPDMedicineExpirationVoxelTomographyRadiologyInternal medicineRespiratory systemSurgery

Abstract

fetched live from OpenAlex

Rationale: Chronic Obstructive Pulmonary Disease (COPD) results in remodeling of both the large and small airways. Computed tomography (CT) imaging allows quantification of morphometric features from the central airways to be measured directly from a single full-inspiration acquisition, and small airway disease (SAD) features indirectly by registering full-inspiration to full-expiration images, known as Disease Probability Measure (DPM SAD ). Our objective is to investigate the relationship between CT central airway tree and DPM SAD features in COPD. Methods: Full-inspiration and full-expiration CT images were obtained from the Canadian Cohort of Obstructive Lung Disease (CanCOLD) study. Image registration and airway segmentation was performed (VIDA Diagnostics Inc.). Central CT airway tree features were generated in each of the 19 bronchopulmonary segments, including measurements reflecting the airway dimensions (lumen diameter, wall area, total airway count, airway tapering), the direction (branch angle, directional cosines) and statistical features (mean, min, max of a given feature). CT DPM SAD measurements were generated by co-registration of full-inspiration to full-expiration CT images. Each voxel was classified as either normal, emphysema or SAD and expressed as the percentage of the total lung volume. DPM SAD was generated in each bronchopulmonary segment to be spatially matched with the regional airway features. For statistical analysis, airway features with high collinearity (r>0.70) were removed. The remaining features were inputted into a mixed effects beta regression model treating participants and bronchopulmonary segments as random effects and the airway features as fixed effects. A null model without airway tree features was generated to compare the AIC and BIC values to assess model fit and a likelihood ratio test was performed. Results: A total of 318 participants were evaluated: n=17 Healthy, n=92 At-Risk, n=114 mild COPD, and n=95 with moderate-severe COPD. A total of 79 features were extracted from central airways; after adjusting for collinearity 16 features remained. Of the remaining features, 8/16 were significantly associated with DPM SAD measurements in the mixed effects beta regression model (P<0.05). There was a significant difference (P<0.0001) between the null model (AIC=-8859.8, BIC=-8827.0) and the airway tree model (AIC=-9967.9, BIC=-9830.1). Significant airway features included: average wall thickness (=0.039), max and min wall thickness using the major diameter (=0.017, =-0.031, respectively), total airway count (=-0.020), airway tapering (=0.019), and directional cosines of the airway in each direction (X: =-0.032,Y: =-0.175, Z: =-0.164). Conclusion: Central airway tree features were associated with measurements reflecting small airway disease.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.003
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.026
Threshold uncertainty score0.051

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.003
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.001
Science and technology studies0.0000.000
Scholarly communication0.0010.000
Open science0.0000.000
Research integrity0.0010.000
Insufficient payload (model declined to judge)0.0020.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.030
GPT teacher head0.277
Teacher spread0.247 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2021
Admission routes2
Has abstractyes

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