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Record W4280521200 · doi:10.1101/2022.04.19.22273994

<i>SLCO5A1</i> and synaptic assembly genes contribute to impulsivity in juvenile myoclonic epilepsy

2022· preprint· en· W4280521200 on OpenAlexafffund
Naim Panjwani, Amy Shakeshaft, Delnaz Roshandel, Lin Fan, Amber Collingwood, Anna Hall, Katherine Keenan, Celine Deneubourg, Filippo Mirabella, Simon Topp, Jana Zárubová, Rhys H. Thomas, Inga Talvik, Marte Syvertsen, Pasquale Striano, Anna Smith, Kaja Kristine Selmer, Guido Rubboli, Alessandro Orsini, Ching Ching Ng, Rikke S. Møller, Kheng Seang Lim, Khalid Hamandi, David A. Greenberg, Joanna Gesche, Elena Gardella, Choong Yi Fong, Christoph P. Beier, Danielle M. Andrade, Heinz Jungbluth, Mark P. Richardson, Annalisa Pastore, Manolis Fanto, Deb K. Pal, Lisa J. Strug

Bibliographic record

VenuemedRxiv · 2022
Typepreprint
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGenetics and Neurodevelopmental Disorders
Canadian institutionsSickKids FoundationKrembil FoundationUniversity of TorontoHospital for Sick Children
FundersEngineering and Physical Sciences Research CouncilMedical Research CouncilCanadian Institutes of Health ResearchHorizon 2020 Framework ProgrammeSheffield Children's NHS Foundation TrustNorges ForskningsrådSt George's University Hospitals NHS Foundation TrustOdense UniversitetshospitalNewcastle upon Tyne Hospitals NHS Foundation TrustEisaiMinistero dell’Istruzione, dell’Università e della RicercaAction Medical ResearchEuropean CommissionSheffield Teaching Hospitals NHS Foundation TrustUniversity of NottinghamNational Institute for Health and Care ResearchNottingham University Hospitals NHS TrustHealth and Care Research WalesRoyal Free London NHS Foundation TrustGW PharmaceuticalsMedical Research Council Centre for Neurodevelopmental DisordersEpilepsy Research UKNationwide Children's HospitalKing's College LondonParc Geneteg CymruSyddansk UniversitetKing's College Hospital NHS Foundation Trust
KeywordsImpulsivityJuvenile myoclonic epilepsyEpileptogenesisEpilepsyPsychologyNeuroscienceBiologyGeneticsPsychiatry

Abstract

fetched live from OpenAlex

Introductory Paragraph Elevated impulsivity is a key component of attention-deficit hyperactivity disorder (ADHD), bipolar disorder and epilepsy 1-5 . We performed a genome-wide association, colocalization and pathway analysis of impulsivity in juvenile myoclonic epilepsy (JME). We identify genome-wide associated SNPs at 8q13.3 (p=7.5 × 10 −9 ) and 10p11.21 (p=3.6 × 10 −8 ). The 8q13.3 locus colocalizes with SLCO5A1 expression quantitative trait loci in cerebral cortex (p=9.5 × 10 −3 ). SLCO5A1 codes for a membrane-bound organic anion transporter 6 and upregulates synapse assembly/organisation genes 7 . Pathway analysis also demonstrates 9.3-fold enrichment for synaptic assembly genes (p=0.03) including NRXN1, NLGN1 and PTPRD . RNAi knockdown of Oatp30B , the Drosophila homolog of SLCO5A1 , causes both over-reactive startling behaviour (p=8.7 × 10 −3 ) and increased seizure-like events (p=6.8 × 10 −7 ). Polygenic risk score for ADHD correlates with impulsivity scores (p=1.60 × 10 −3 ), demonstrating shared genetic contributions. SLCO5A1 loss-of-function represents a novel impulsivity and seizure mechanism. Synaptic assembly genes may inform the aetiology of impulsivity in health and disease.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.020
Threshold uncertainty score0.065

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0200.003

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.010
GPT teacher head0.248
Teacher spread0.238 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2022
Admission routes2
Has abstractyes

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