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Record W4282938041 · doi:10.1101/2022.06.13.22276353

Heavy-tailed sexual contact networks and the epidemiology of monkeypox outbreak in non-endemic regions, May 2022

2022· preprint· en· W4282938041 on OpenAlexfundno aff
Akira Endo, Hiroaki Murayama, Sam Abbott, Ruwan Ratnayake, Carl A. B. Pearson, W. John Edmunds, Elizabeth Fearon, Sebastian Funk

Bibliographic record

VenuemedRxiv · 2022
Typepreprint
Languageen
FieldImmunology and Microbiology
TopicPoxvirus research and outbreaks
Canadian institutionsnot available
FundersJapan Society for the Promotion of ScienceCanadian Institutes of Health ResearchEuropean CommissionUK Research and InnovationMedical Research CouncilEuropean Federation of Pharmaceutical Industries and AssociationsInnovative Medicines InitiativeWellcome Trust
KeywordsMonkeypoxOutbreakMen who have sex with menTransmission (telecommunications)DemographyEpidemiologySexual contactBasic reproduction numberGeographyPublic healthPopulationVirologyBiologyMedicineHuman immunodeficiency virus (HIV)Sociology

Abstract

fetched live from OpenAlex

Abstract A global outbreak of monkeypox across non-endemic regions including Europe and North America was confirmed in May 2022. The current outbreak has shown distinct epidemiological features compared with past outbreaks in non-endemic settings, most notably its observed rapid growth and predominant spread among men who have sex with men (MSM). We use a branching process transmission model fitted to empirical sexual partnership data in the UK to show that the heavy-tailed nature of the sexual partnership degree distribution, where a small fraction of individuals have disproportionately large numbers of partners, can explain the sustained growth of monkeypox cases among the MSM population despite the absence of such patterns of spread in past outbreaks. We also suggest that the basic reproduction number ( R 0 ) for monkeypox over the MSM sexual contact network may be substantially greater than 1 for a plausible range of assumptions, which poses a challenge to outbreak containment efforts. Ensuring ongoing support and tailored public health messaging to facilitate prevention and early detection among MSM with a large number of sexual partners is warranted.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.005
metaresearch head score (Gemma)0.002
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow), Research integrity
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.054
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0050.002
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0020.000
Bibliometrics0.0000.000
Science and technology studies0.0000.001
Scholarly communication0.0000.000
Open science0.0010.003
Research integrity0.0010.004
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.032
GPT teacher head0.305
Teacher spread0.273 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations37
Published2022
Admission routes1
Has abstractyes

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