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Record W4283018900 · doi:10.1038/s42003-022-03529-z

Genome-wide meta-analysis of iron status biomarkers and the effect of iron on all-cause mortality in HUNT

2022· review· en· W4283018900 on OpenAlexaff
Marta R. Moksnes, Sarah E. Graham, Kuan-Han H. Wu, Ailin Falkmo Hansen, Sarah A. Gagliano Taliun, Wei Zhou, Ketil Thorstensen, Lars G. Fritsche, Dipender Gill, Amy M. Mason, Francesco Cucca, David Schlessinger, Gonçalo R. Abecasis, Stephen Burgess, Bjørn Olav Åsvold, Jonas B. Nielsen, Kristian Hveem, Cristen J. Willer, Ben Brumpton

Bibliographic record

VenueCommunications Biology · 2022
Typereview
Languageen
FieldMedicine
TopicIron Metabolism and Disorders
Canadian institutionsUniversité de MontréalMontreal Heart Institute
FundersMedical Research CouncilFakultet for medisin og helsevitenskap, Norges Teknisk-Naturvitenskapelige UniversitetNational Heart, Lung, and Blood InstituteMedical School, University of MichiganNorwegian Institute of Public HealthNational Institutes of HealthDepartment of Health and Social CareNational Institute for Health and Care ResearchEuropean Federation of Pharmaceutical Industries and AssociationsBritish Heart FoundationWellcome TrustNorges Teknisk-Naturvitenskapelige UniversitetHelse Midt-NorgeRoyal SocietyNorges ForskningsrådFaculty of Medicine and Health, University of SydneyUniversity of Michigan
KeywordsTransferrin saturationMendelian randomizationTransferrinSerum ironIron deficiencyBiologyFerritinPopulationGeneticsGenome-wide association studyBiomarkerTransferrin receptorPhysiologyGenotypeBioinformaticsMedicineGeneInternal medicineSingle-nucleotide polymorphismAnemiaGenetic variantsEndocrinologyEnvironmental healthBiochemistry

Abstract

fetched live from OpenAlex

Iron is essential for many biological processes, but iron levels must be tightly regulated to avoid harmful effects of both iron deficiency and overload. Here, we perform genome-wide association studies on four iron-related biomarkers (serum iron, serum ferritin, transferrin saturation, total iron-binding capacity) in the Trøndelag Health Study (HUNT), the Michigan Genomics Initiative (MGI), and the SardiNIA study, followed by their meta-analysis with publicly available summary statistics, analyzing up to 257,953 individuals. We identify 123 genetic loci associated with iron traits. Among 19 novel protein-altering variants, we observe a rare missense variant (rs367731784) in HUNT, which suggests a role for DNAJC13 in transferrin recycling. We further validate recently published results using genetic risk scores for each biomarker in HUNT (6% variance in serum iron explained) and present linear and non-linear Mendelian randomization analyses of the traits on all-cause mortality. We find evidence of a harmful effect of increased serum iron and transferrin saturation in linear analyses that estimate population-averaged effects. However, there was weak evidence of a protective effect of increasing serum iron at the very low end of its distribution. Our findings contribute to our understanding of the genes affecting iron status and its consequences on human health.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.002
metaresearch head score (Gemma)0.001
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Meta-analysis · Consensus signal: Meta-analysis
GenreCandidate signal: Review · Consensus signal: Review
Teacher disagreement score0.460
Threshold uncertainty score0.679

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0020.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0040.001
Bibliometrics0.0010.001
Science and technology studies0.0000.001
Scholarly communication0.0000.000
Open science0.0010.001
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.173
GPT teacher head0.427
Teacher spread0.254 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designMeta-analysis
Domainnot available
GenreReview

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations39
Published2022
Admission routes1
Has abstractyes

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