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Record W4285160976 · doi:10.5376/jtsr.2022.12.0001

Gene Expression Profiling Analysis of Resistant and Susceptible Tea Cultivars in Response to Tea Blister Blight (<i>Exobosidium vexans</i> Massee)

2022· article· en· W4285160976 on OpenAlexvenueno aff
Yaqin Long, Longxun Ran, Lifei Xia, Hao Qu, Yiping Tian, Linbo Chen, Mingzhi Liang

Bibliographic record

VenueJournal of Tea Science Research · 2022
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicPlant Disease Resistance and Genetics
Canadian institutionsnot available
Fundersnot available
KeywordsBiologyGeneGene expressionGene expression profilingTranscriptomeSecondary metabolismPlant disease resistanceGeneticsBiosynthesis

Abstract

fetched live from OpenAlex

The resistant and susceptible tea cultivars were selected for revealing the defense response mechanism induced by tea blister blight. The DEGs before and after infection by tea blister blight were analyzed based on RNA sequencing and digital expression spectrum. The results showed a total of 974 DEGs were identified, of which 122 DEGs were co-expressed genes in both resistant and susceptible cultivars, 364 DEGs were specific genes only in blister disease-resistant cultivar, and 488 DEGs were specific genes only in blight disease-susceptible cultivar. The infection of tea blister blight mainly affected the expression levels of key genes involved in metabolic pathways, protein processing in endoplasmic reticulum, biosynthesis of secondary metabolites, plant-pathogen interaction, plant hormone signal transduction, starch and sucrose metabolism, phenylalanine, tyrosine and tryptophan biosynthesis and so on. These DEGs included disease resistance protein gene, hydrolase gene, cell wall reinforcement genes, transcription factor genes, plant hormones and their signal transduction genes, secondary metabolism and oxidase genes, transporter gene and so on. The differential expressions of 6 genes were verified by Real-time quantitative PCR, which showed a general consistency consistent with the results of transcriptome sequencing. This study preliminarily clarified the influence of tea blister blight infection on gene transcription levels in tea plants with this study, which laid a theoretical foundation for researching the molecular mechanism of disease resistance in tea plants.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.002

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0000.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.045
GPT teacher head0.328
Teacher spread0.283 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations1
Published2022
Admission routes1
Has abstractyes

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