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Record W4285498948 · doi:10.1016/j.crbiot.2022.07.001

Unraveling the mystery of subsurface microorganisms in bioremediation

2022· article· en· W4285498948 on OpenAlex

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

affAt least one author lists a Canadian institution in the pinned OpenAlex snapshot.
fundA Canadian funder is recorded on the work.

Bibliographic record

VenueCurrent Research in Biotechnology · 2022
Typearticle
Languageen
FieldEnvironmental Science
TopicMicrobial Community Ecology and Physiology
Canadian institutionsYork University
FundersNatural Sciences and Engineering Research Council of CanadaYork University
KeywordsBioremediationMetagenomicsBiogeochemical cycleMicrobial population biologyBiochemical engineeringMicroorganismSubsurface flowBiodegradationEnvironmental scienceBiologyEcologyGroundwaterBacteriaEngineering

Abstract

fetched live from OpenAlex

Microorganisms are the key players in biogeochemical processes in the shallow subsurface for bioremediation. Estimation of genetic diversity, microbial activity, and their metabolic functions are the most applicable methods to explore the biodegradation processes in the subsurface. Several techniques such as community-level physiological profiling, sequencing, metagenomics, enzyme assay, and culture-based methods are used to investigate the metabolic potential, functional diversity, and genetic diversity of inherent microbial communities. These studies help to understand the metabolic pathways and biodegradation patterns in the subsurface, however, the interspecies microbial interactions and their transport mechanism in the porous media toward bioremediation of subsurface pollutants are still not well understood. Despite the advanced characterization methods for microbes, multiple crucial knowledge gaps of the dynamic subsurface microbial community remain unraveled. A detailed understanding of subsurface microbial interactions, mineral-metal-microbial correlation, transport mechanism, and degradation pathways will help in the optimization and design of in-situ bioremediation in the future. There is a need for detail-oriented exploration of these fundamental microbial processes to gain a greater understanding of microbial dynamics to facilitate the advanced bioremediation processes sustainably.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.002
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesInsufficient payload (model declined to judge)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.428
Threshold uncertainty score0.999

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0020.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.001
Science and technology studies0.0000.001
Scholarly communication0.0000.000
Open science0.0010.002
Research integrity0.0000.002
Insufficient payload (model declined to judge)0.0020.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.085
GPT teacher head0.357
Teacher spread0.273 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it