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Record W4288069250 · doi:10.3138/jammi-2021-0026

Evaluation of the performance of multiple immunoassay diagnostic platforms on the National Microbiology Laboratory SARS-CoV-2 National Serology Panel

2022· article· en· W4288069250 on OpenAlexaffvenueabout
Antonia Dibernardo, Nikki PL Toledo, Alyssia Robinson, Carla Osiowy, Elizabeth Giles, Jacqueline Day, L. Robbin Lindsay, Michael Drebot, Timothy F. Booth, Tamara Pidduck, Ashley Baily, Carmen Charlton, Graham Tipples, Jamil N. Kanji, Gino Brochu, Amanda Lang, Christian Therrien, Mélina Bélanger-Collard, Sylvie-Nancy Beaulac, Brian M. Gilfix, Guy Boivin, Marie‐Ève Hamelin, Julie Carbonneau, Simon Lévesque, Philippe Martin, Andrés Finzi, Gabrielle Gendron‐Lepage, Guillaume Goyette, Mehdi Benlarbi, Romain Gasser, Claude Fortin, Valérie Martel-Lafferrière, Myriam Lavoie, Renée Guérin, Louis‐Patrick Haraoui, Christian Renaud, Craig Jenkins, Sheila F. O’Brien, Steven J. Drews, Valerie Conrod, Vanessa Tran, Bill Awrey, R. Scheuermann, Alan P. Dupuis, Anne F. Payne, Casey Warszycki, Roxie C. Girardin, William Lee, George Zahariadis, Lei Jiao, Robert Needle, James Cordenbach, Jerry Zaharatos, Kellee Taylor, Marty Teltscher, Matthew Miller, May ElSherif, Peter K. J. Robertson, Jason L. Robinson

Bibliographic record

VenueJournal of the Association of Medical Microbiology and Infectious Disease Canada · 2022
Typearticle
Languageen
FieldMedicine
TopicSARS-CoV-2 and COVID-19 Research
Canadian institutionsHealth PEIDalhousie UniversityJewish General HospitalGovernment of Newfoundland and LabradorAlpha Cancer TechnologiesPublic Health OntarioNewfoundland and Labrador Centre for Applied Health ResearchCentre Hospitalier Universitaire Sainte-JustineCanadian Blood ServicesUniversité de MontréalUniversity of Alberta HospitalCentre Intégré Universitaire de Santé et de Services Sociaux du Saguenay–Lac-Saint-JeanUniversity of TorontoUniversité de SherbrookeSaskatchewan Health AuthorityCentre Hospitalier de l’Université de MontréalUniversité LavalCentre intégré universitaire de santé et de services sociaux de la Mauricie-et-du-Centre-du-QuébecCentre Intégré Universitaire de Santé et de Services Sociaux du Centre-Sud-de-l'Île-de-MontréalMcGill UniversityPublic Health Agency of CanadaMcGill University Health CentreInstitut National de Santé Publique du QuébecAlpha Technologies (Canada)Saskatchewan HealthUniversity of CalgaryUniversity of AlbertaCentre Hospitalier Universitaire de SherbrookeAlberta Hospital EdmontonBC Centre for Disease Control
Fundersnot available
KeywordsSerologySevere acute respiratory syndrome coronavirus 2 (SARS-CoV-2)MedicineRoche DiagnosticsImmunoassayCoronavirus disease 2019 (COVID-19)VirologyAntibodyImmunologyInternal medicineInfectious disease (medical specialty)Disease

Abstract

fetched live from OpenAlex

BACKGROUND: Serological assays designed to detect SARS-CoV-2 antibodies are being used in serological surveys and other specialized applications. As a result, and to ensure that the outcomes of serological testing meet high quality standards, evaluations are required to assess the performance of these assays and the proficiency of laboratories performing them. METHODS: A panel of 60 plasma/serum samples from blood donors who had reverse transcriptase–polymerase chain reaction (RT-PCR) confirmed SARS-CoV-2 infections and 21 SARS-CoV-2 negative samples were secured and distributed to interested laboratories within Canada ( n = 30) and the United States ( n = 1). Participating laboratories were asked to provide details on the diagnostic assays used, the platforms the assays were performed on, and the results obtained for each panel sample. Laboratories were blinded with respect to the expected outcomes. RESULTS: The performance of the different assays evaluated was excellent, with the high-throughput platforms of Roche, Ortho, and Siemens demonstrating 100% sensitivity. Most other high-throughput platforms had sensitivities of >93%, with the exception of the IgG assay using the Abbott ARCHITECT which had an average sensitivity of only 87%. The majority of the high-throughput platforms also demonstrated very good specificities (>97%). CONCLUSION: This proficiency study demonstrates that most of the SARS-CoV-2 serological assays utilized by provincial public health or hospital laboratories in Canada have acceptable sensitivity and excellent specificity.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.006
metaresearch head score (Gemma)0.016
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMetaresearch
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.156
Threshold uncertainty score0.998

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0060.016
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.025
GPT teacher head0.292
Teacher spread0.267 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations8
Published2022
Admission routes3
Has abstractyes

Explore more

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