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Record W4292636384 · doi:10.1371/journal.pone.0273116

A genome-wide association study of total child psychiatric problems scores

2022· article· en· W4292636384 on OpenAlexaff
Alexander Neumann, Ilja M. Nolte, Irene Pappa, Tarunveer S. Ahluwalia, Erik Pettersson, Alina Rodriguez, Andrew Whitehouse, Beben Benyamin, Anke R. Hammerschlag, Quinta Helmer, Ville Karhunen, Eva Krapohl, Yi Lu, Peter J. van der Most, Teemu Palviainen, Beaté St Pourcain, Ilkka Seppälä, Anna Suarez, Natàlia Vilor‐Tejedor, Carla M. T. Tiesler, Carol A. Wang, Amanda G. Wills, Ang Zhou, Silvia Alemany, Hans Bisgaard, Klaus Bønnelykke, Gareth E. Davies, Christian Hakulinen, Anjali K. Henders, Elina Hyppönen, Jakob Stokholm, Meike Bartels, Jouke‐Jan Hottenga, Joachim Heinrich, John K. Hewitt, Liisa Keltikangas‐Järvinen, Tellervo Korhonen, Jaakko Kaprio, Jari Lahti, Marius Lahti‐Pulkkinen, Terho Lehtimäki, Christel M. Middeldorp, Jake M. Najman, Craig E. Pennell, Chris Power, Albertine J. Oldehinkel, Robert Plomin, Katri Räikkönen, Olli T. Raitakari, Kaili Rimfeld, Lærke Sass, Harold Snieder, Marie Standl, Jordi Sunyer, Gail Williams, Marian J. Bakermans‐Kranenburg, Dorret I. Boomsma, Marinus H. van IJzendoorn, Catharina A. Hartman, Henning Tiemeier

Bibliographic record

VenuePLoS ONE · 2022
Typearticle
Languageen
FieldPsychology
TopicChild and Adolescent Psychosocial and Emotional Development
Canadian institutionsJewish General Hospital
FundersNational Institute of Diabetes and Digestive and Kidney DiseasesNational Institute of Mental HealthNational Institute on AgingAcademy of FinlandNational Institute on Alcohol Abuse and AlcoholismHorizon 2020Signe ja Ane Gyllenbergin SäätiöMedical Research CouncilNational Institute on Drug AbusePaavo Nurmen SäätiöDiabetesliittoKelaTampereen TuberkuloosisäätiöSydäntutkimussäätiöNational Heart, Lung, and Blood InstituteEmil Aaltosen SäätiöJuho Vainion SäätiöFoundation for Cardiovascular ResearchLundbeckfondenSuomen KulttuurirahastoZonMwEconomic and Social Research CouncilEuropean CommissionSteno Diabetes Center CopenhagenNederlandse Organisatie voor Wetenschappelijk OnderzoekWellcome Trust
KeywordsGenome-wide association studyAssociation (psychology)Psychiatric geneticsPsychiatryMedicineBiologyPsychologyGeneticsSchizophrenia (object-oriented programming)Single-nucleotide polymorphismGenotypeGene

Abstract

fetched live from OpenAlex

Substantial genetic correlations have been reported across psychiatric disorders and numerous cross-disorder genetic variants have been detected. To identify the genetic variants underlying general psychopathology in childhood, we performed a genome-wide association study using a total psychiatric problem score. We analyzed 6,844,199 common SNPs in 38,418 school-aged children from 20 population-based cohorts participating in the EAGLE consortium. The SNP heritability of total psychiatric problems was 5.4% (SE = 0.01) and two loci reached genome-wide significance: rs10767094 and rs202005905. We also observed an association of SBF2, a gene associated with neuroticism in previous GWAS, with total psychiatric problems. The genetic effects underlying the total score were shared with common psychiatric disorders only (attention-deficit/hyperactivity disorder, anxiety, depression, insomnia) (rG > 0.49), but not with autism or the less common adult disorders (schizophrenia, bipolar disorder, or eating disorders) (rG < 0.01). Importantly, the total psychiatric problem score also showed at least a moderate genetic correlation with intelligence, educational attainment, wellbeing, smoking, and body fat (rG > 0.29). The results suggest that many common genetic variants are associated with childhood psychiatric symptoms and related phenotypes in general instead of with specific symptoms. Further research is needed to establish causality and pleiotropic mechanisms between related traits.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.002
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.010
Threshold uncertainty score0.019

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.002
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.001
Bibliometrics0.0010.002
Science and technology studies0.0010.000
Scholarly communication0.0010.000
Open science0.0000.001
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0030.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.027
GPT teacher head0.235
Teacher spread0.207 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations28
Published2022
Admission routes1
Has abstractyes

Explore more

Same venuePLoS ONE→Same topicChild and Adolescent Psychosocial and Emotional Development→French-language works237,207→