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Record W4292883075 · doi:10.1007/s00018-022-04515-8

Cdk5 regulates IP3R1-mediated Ca2+ dynamics and Ca2+-mediated cell proliferation

2022· article· en· W4292883075 on OpenAlexafffund
Saranya NavaneethaKrishnan, Vincent Law, Jungkwon Lee, Jesusa L. Rosales, Ki‐Young Lee

Bibliographic record

VenueCellular and Molecular Life Sciences · 2022
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicMitochondrial Function and Pathology
Canadian institutionsAlberta Children's HospitalUniversity of Calgary
FundersNatural Sciences and Engineering Research Council of CanadaAlberta Cancer FoundationUniversity of Texas Southwestern Medical Center
KeywordsCyclin-dependent kinase 5Cell biologyEndoplasmic reticulumInositol trisphosphate receptorPhosphorylationMitochondrionIntracellularCytosolExtracellularCalciumInositolKinaseChemistryBiologyBiochemistryReceptorProtein kinase AMitogen-activated protein kinase kinase

Abstract

fetched live from OpenAlex

Abstract Loss of cyclin-dependent kinase 5 (Cdk5) in the mitochondria-associated endoplasmic reticulum (ER) membranes (MAMs) increases ER–mitochondria tethering and ER Ca 2+ transfer to the mitochondria, subsequently increasing mitochondrial Ca 2+ concentration ([Ca 2+ ] mt ). This suggests a role for Cdk5 in regulating intracellular Ca 2+ dynamics, but how Cdk5 is involved in this process remains to be explored. Using ex vivo primary mouse embryonic fibroblasts (MEFs) isolated from Cdk5 −/− mouse embryos, we show here that loss of Cdk5 causes an increase in cytosolic Ca 2+ concentration ([Ca 2+ ] cyt ), which is not due to reduced internal Ca 2+ store capacity or increased Ca 2+ influx from the extracellular milieu. Instead, by stimulation with ATP that mediates release of Ca 2+ from internal stores, we determined that the rise in [Ca 2+ ] cyt in Cdk5 −/− MEFs is due to increased inositol 1,4,5-trisphosphate receptor (IP3R)-mediated Ca 2+ release from internal stores. Cdk5 interacts with the IP3R1 Ca 2+ channel and phosphorylates it at Ser 421 . Such phosphorylation controls IP3R1-mediated Ca 2+ release as loss of Cdk5, and thus, loss of IP3R1 Ser 421 phosphorylation triggers an increase in IP3R1-mediated Ca 2+ release in Cdk5 −/− MEFs, resulting in elevated [Ca 2+ ] cyt . Elevated [Ca 2+ ] cyt in these cells further induces the production of reactive oxygen species (ROS), which upregulates the levels of Nrf2 and its targets, Prx1 and Prx2. Cdk5 −/− MEFs, which have elevated [Ca 2+ ] cyt , proliferate at a faster rate compared to wt, and Cdk5 −/− embryos have increased body weight and size compared to their wt littermates. Taken together, we show that altered IP3R1-mediated Ca 2+ dynamics due to Cdk5 loss correspond to accelerated cell proliferation that correlates with increased body weight and size in Cdk5 −/− embryos.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.006

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0020.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.007
GPT teacher head0.211
Teacher spread0.204 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations17
Published2022
Admission routes2
Has abstractyes

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