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Record W4295028397 · doi:10.21203/rs.3.rs-2026810/v1

Meta-analysis identifies common gut microbiota signatures in patients with multiple sclerosis

2022· preprint· en· W4295028397 on OpenAlexaff
Qingqi Lin, Yair Dorsett, Ali Mirza, Helen Tremlett, Laura Piccio, Erin E. Longbrake, Siobhán Ní Choileáin, David A. Hafler, Laura M. Cox, Howard L. Weiner, Takashi Yamamura, Kun Chen, Yufeng Wu, Yanjiao Zhou

Bibliographic record

VenueResearch Square · 2022
Typepreprint
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGut microbiota and health
Canadian institutionsUniversity of British Columbia
FundersSun Yat-sen UniversityUniversity of Connecticut Health Center
KeywordsPrevotellaMicrobiomeBiologyBacteroidesDysbiosisMultiple sclerosisGut floraClostridiaImmunologyBioinformaticsGeneticsBacteria

Abstract

fetched live from OpenAlex

Abstract BackgroundPrevious studies have identified a large number of distinct microbial taxa that are different between patients with multiple sclerosis (MS) and controls. However, interpretating findings on MS-associated microbiome is challenging as results do not completely concur and studies have included relatively few individuals. To date, it is unclear whether there is a common gut microbial signature in patients with MS across studies. To identity the most common compositional differences of the gut microbiome in MS versus healthy controls, we performed a meta-analysis. This was based on 16S rRNA gene sequences from seven published studies, comprising a total of 524 adult patients with MS and control subjects.ResultsWe found that although alpha and beta diversity did not differ between MS and controls, a lower relative abundance ofPrevotellaand a dysbiosis of numerous genera within theClostridiaclass were reproducibly associated with MS. Additionally, network analysis revealed that the recognized negativeBacteroides-Prevotellacorrelation in controls was disrupted in MS. immunosuppressive agents normalized MS-associated microbiomePrevotellato a similar level as healthy controls.ConclusionsOur meta-analysis revealed reproducible gut microbiome signatures in MS across geographically diverse studies. These findings form the basis for future novel therapeutic approaches and possibly enhanced MS recognition/diagnosis by targeting common microbiome signatures.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.011
metaresearch head score (Gemma)0.020
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Meta-analysis · Consensus signal: Meta-analysis
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.011
Threshold uncertainty score0.060

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0110.020
Meta-epidemiology (narrow)0.0020.001
Meta-epidemiology (broad)0.0060.021
Bibliometrics0.0070.007
Science and technology studies0.0010.000
Scholarly communication0.0040.001
Open science0.0010.002
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0030.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.104
GPT teacher head0.366
Teacher spread0.261 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designMeta-analysis
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2022
Admission routes1
Has abstractyes

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