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Record W4296635294 · doi:10.1093/jas/skac247.459

PSIV-A-13 Estimation of Nellore Genetic Contribution Over Certified Angus Beef Sold in Brazil

2022· article· en· W4296635294 on OpenAlexaff
Cris Luana Castro de Nunes, Fabyano Fonseca e Silva, Renata Veroneze, Marcio Souza de Duarte, Simone Eliza Facioni Guimarães, Luiz Antônio Josakian, Henrique Torres Ventura, M. L. Chizzotti

Bibliographic record

VenueJournal of Animal Science · 2022
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicIdentification and Quantification in Food
Canadian institutionsUniversity of Guelph
Fundersnot available
KeywordsBiologyBreedSingle-nucleotide polymorphismAnimal scienceBeef cattlePurebredGenotypingVeterinary medicineBiotechnologyGenotypeGeneticsMedicine

Abstract

fetched live from OpenAlex

Abstract Meat traceability and certification increase consumers’ confidence in making purchasing decisions. In Brazil, certified Angus beef follows specific regulation, which requires a minimum of 50% of Angus genome in its breed composition to be commercialized as certified Angus beef. Because the majority of the beef produced in Brazil is Nellore-based, the objective of this study was to estimate the Nellore genetic contribution over certified Angus beef sold in Brazil using genetic traceability. Two hundred sixty-one certified Angus ribeye steaks were obtained from four different brands in commercial establishments. DNA extraction and genotyping were performed for each sample. Genotype data from purebred Angus and Nellore were also available, generating three datasets: meat samples, Angus, and Nellore. Samples and single nucleotide polymorphism (SNP) markers with call rate lower than 0.90 and duplicated samples were excluded from the analysis for each group. Thus, 75,242 SNPs and 99 samples were unique and remained in the meat sample group. For the genotyped reference groups, Angus had 34,586 SNPs and 71 samples while Nellore had 743,665 SNPs and 1,931 samples. The software Admixture were used for the genetic composition prediction using only SNPs in common across the three groups (29563 SNPs). On average, meat samples presented 57% and 43% of Angus and Nellore genome composition, respectively, with proportions ranging from 28% to 87% of Angus genome. Additionally, a principal components analysis showed a clear separation between Nellore and Angus population, whereas the evaluated meat samples were clustered between the two groups. In conclusion, certified Angus beef sold in Brazil have a great contribution of Nellore and some samples had lower Angus contribution than the expected by the certification.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.367
Threshold uncertainty score0.221

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.016
GPT teacher head0.300
Teacher spread0.285 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2022
Admission routes1
Has abstractyes

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